RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 OR4C46A6NHA9 309 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 BUB1B-PAK6H3BSN5 160 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 TTRP02766 147 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 HTR1AP08908 422 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 UBBP0CG47 229 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 RANP62826 216 aaKnown RBP0.71□□□□□ -2.3
SCFD1-218ENST00000556256 CTAG1AP78358 180 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 RUNX1Q01196 453 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 RGS21Q2M5E4 152 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 LPCAT3Q6P1A2 487 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 MCFD2Q8NI22 146 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 H1FXQ92522 213 aaKnown RBP0.71□□□□□ -2.3
SCFD1-218ENST00000556256 SCGB3A1Q96QR1 104 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 TMEM56-RWDD3S4R434 201 aa0.71□□□□□ -2.3
SCFD1-218ENST00000556256 ROBO3Q96MS0 1386 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 MUC5BQ9HC84 5762 aaPredicted RBP0.7□□□□□ -2.3
SCFD1-218ENST00000556256 FREM1Q5H8C1 2179 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 TOPBP1Q92547 1522 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 NEO1Q92859 1461 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 A0A087WUJ7 227 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 EXOC1LA0A1B0GW35 172 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 DPRXA6NFQ7 191 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 SMIM23A6NLE4 172 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 TMEM212A6NML5 194 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 LSM6P62312 80 aaKnown RBP0.7□□□□□ -2.3
SCFD1-218ENST00000556256 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.7□□□□□ -2.3
SCFD1-218ENST00000556256 MIR17HGQ75NE6 70 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 C12orf45Q8N5I9 185 aaPredicted RBP0.7□□□□□ -2.3
SCFD1-218ENST00000556256 ANKRD29Q8N6D5 301 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 ZNF565Q8N9K5 539 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 C8orf76Q96K31 380 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 REG4Q9BYZ8 158 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 COMMD5Q9GZQ3 224 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 CKLFQ9UBR5 152 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 MYH11P35749 1972 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 HECW2Q9P2P5 1572 aa0.7□□□□□ -2.3
SCFD1-218ENST00000556256 IGKV1D-42A0A075B6H8 117 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 FAM236DA0A1B0GTK5 79 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 OR2J2O76002 312 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 LYPLA2O95372 231 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 CNIH1O95406 144 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 IFNA10P01566 189 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 SMIM10L2AP0DMW4 78 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 SMIM10L2BP0DMW5 78 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 FAM236CP0DP71 79 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 CRYGAP11844 174 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 COX6A1P12074 109 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 FKBP2P26885 142 aaKnown RBP0.69□□□□□ -2.3
SCFD1-218ENST00000556256 OMPP47874 163 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 MYL6P60660 151 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 CDC42P60953 191 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 PLCXD2Q0VAA5 305 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 ITGB3BPQ13352 177 aaPredicted RBP0.69□□□□□ -2.3
SCFD1-218ENST00000556256 SURF2Q15527 256 aaPredicted RBP0.69□□□□□ -2.3
SCFD1-218ENST00000556256 IAH1Q2TAA2 248 aaPredicted RBP0.69□□□□□ -2.3
SCFD1-218ENST00000556256 AAED1Q7RTV5 226 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 BPIFA4PQ86YQ2 179 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 TRAPPC5Q8IUR0 188 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 C12orf29Q8N999 325 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 WFDC11Q8NEX6 87 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 OR4D11Q8NGI4 311 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 DCUN1D1Q96GG9 259 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 CCDC42Q96M95 316 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 ZFYVE9O95405 1425 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 ZFHX2Q9C0A1 2572 aaPredicted RBP0.69□□□□□ -2.3
SCFD1-218ENST00000556256 AHNAKQ09666 5890 aaKnown RBP0.69□□□□□ -2.3
SCFD1-218ENST00000556256 COL4A5P29400 1685 aa0.69□□□□□ -2.3
SCFD1-218ENST00000556256 COL6A6A6NMZ7 2263 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 MYO3BQ8WXR4 1341 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 TRAV9-1A0A075B6T8 112 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 A0A0D9SG52 128 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 C19orf84I3L1E1 186 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 OR2T1O43869 369 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 OR5F1O95221 314 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 TCRBP04435 133 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 AESQ08117 197 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 CLVS1Q8IUQ0 354 aaPredicted RBP0.68□□□□□ -2.3
SCFD1-218ENST00000556256 AQP3Q92482 292 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 TMEM147Q9BVK8 224 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 DCSTAMPQ9H295 470 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 MIXL1Q9H2W2 232 aa0.68□□□□□ -2.3
SCFD1-218ENST00000556256 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.68□□□□□ -2.3
SCFD1-218ENST00000556256 BRWD1Q9NSI6 2320 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 RIC1Q4ADV7 1423 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 FUOMA2VDF0 154 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 SMIM9A6NGZ8 99 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 GOLGA6L19H0YKK7 550 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 RPP14O95059 124 aaKnown RBP0.67□□□□□ -2.3
SCFD1-218ENST00000556256 TCL1BO95988 128 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 HAND1O96004 215 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 RPS17P08708 135 aaKnown RBP0.67□□□□□ -2.3
SCFD1-218ENST00000556256 ASAH2BP0C7U1 165 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 MIFP14174 115 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 IL9P15248 144 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 SPI1P17947 270 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 CEBPGP53567 150 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 DEFA1P59665 94 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 PDE6HQ13956 83 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 SPOPLQ6IQ16 392 aa0.67□□□□□ -2.3
SCFD1-218ENST00000556256 SIGLECL1Q8N7X8 197 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms