RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 OR1L8Q8NGR8 309 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 SPRY4Q9C004 299 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 TECRQ9NZ01 308 aaKnown RBP12.26□□□□□ -0.45
CUX1-215ENST00000556210 TIMM9Q9Y5J7 89 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 J3QW42 95 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 TEX38Q6PEX7 206 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 ZCCHC14Q8WYQ9 949 aaKnown RBP12.26□□□□□ -0.45
CUX1-215ENST00000556210 CCL21O00585 134 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 CA1P00915 261 aaPredicted RBP12.26□□□□□ -0.45
CUX1-215ENST00000556210 ZNF137PP52743 207 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 PAFAH1B2P68402 229 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 UTF1Q5T230 341 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 LEMD1Q68G75 181 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 BEND2Q8NDZ0 799 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 ADTRPQ96IZ2 230 aa12.26□□□□□ -0.45
CUX1-215ENST00000556210 GCHFRP30047 84 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 GBGT1Q8N5D6 347 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 SNHG12Q9BXW3 62 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 GNB4Q9HAV0 340 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 SETD2Q9BYW2 2564 aaPredicted RBP12.25□□□□□ -0.45
CUX1-215ENST00000556210 LOC102724200A0A096LPH7 203 aaPredicted RBP12.25□□□□□ -0.45
CUX1-215ENST00000556210 C20orf202A1L168 122 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 C15orf62A8K5M9 175 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 SIAH2O43255 324 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 TNFSF13O75888 250 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 CSN3P07498 182 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 KRTCAP3Q53RY4 240 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 DMRTA1Q5VZB9 504 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 Q6ZS49 121 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 TRAV5A0A0B4J249 113 aa12.25□□□□□ -0.45
CUX1-215ENST00000556210 SAA1P0DJI8 122 aaPredicted RBP12.24□□□□□ -0.45
CUX1-215ENST00000556210 ADMP35318 185 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 KIR2DS2P43631 304 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 MMDQ15546 238 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 COL5A1-AS1Q5SY13 56 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 C11orf53Q8IXP5 236 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 KLHDC1Q8N7A1 406 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 RNASE7Q9H1E1 156 aaKnown RBP12.24□□□□□ -0.45
CUX1-215ENST00000556210 ASCL3Q9NQ33 180 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 SERF1AO75920 110 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 CT45A6P0DMU7 189 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 CT45A5P0DMU8 189 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 CT45A7P0DMV0 189 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 DNLZQ5SXM8 178 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 OR2D3Q8NGH3 330 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 PRR7Q8TB68 274 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 EAF1Q96JC9 268 aaPredicted RBP12.24□□□□□ -0.45
CUX1-215ENST00000556210 TMSB15BA0A087X1C1 80 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 TFPI2P48307 235 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 BPIFB3P59826 476 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 VAMP3Q15836 100 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 SCNM1Q9BWG6 230 aa12.24□□□□□ -0.45
CUX1-215ENST00000556210 ATOH7Q8N100 152 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 OCC1Q8TAD7 63 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 IGFBPL1Q8WX77 278 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 TLN2Q9Y4G6 2542 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 MAP1AP78559 2803 aaPredicted RBP12.23□□□□□ -0.45
CUX1-215ENST00000556210 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.23□□□□□ -0.45
CUX1-215ENST00000556210 BRS3P32247 399 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 DAZAP2Q15038 168 aaPredicted RBP12.23□□□□□ -0.45
CUX1-215ENST00000556210 MSMPQ1L6U9 139 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 C10orf113Q5VZT2 155 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 Q6ZSR3 168 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 TMEM106BQ9NUM4 274 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 HSBP1L1C9JCN9 74 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 PYYP10082 97 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 MFAP2P55001 183 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 KRTAP27-1Q3LI81 207 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 LINC01551Q86U37 167 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 C1orf162Q8NEQ5 155 aaPredicted RBP12.23□□□□□ -0.45
CUX1-215ENST00000556210 TANC2Q9HCD6 1990 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 ATG2AQ2TAZ0 1938 aa12.23□□□□□ -0.45
CUX1-215ENST00000556210 TRBV6-6A0A0A6YYG2 114 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 PRSS8Q16651 343 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 CENPWQ5EE01 88 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 ACTL10Q5JWF8 245 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 YPEL4Q96NS1 127 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 WDR83OSQ9Y284 106 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 IGHG3P01860 377 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 TCTAP57738 103 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 RNASEKQ6P5S7 137 aaKnown RBP12.22□□□□□ -0.45
CUX1-215ENST00000556210 OR1L4Q8NGR5 311 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 RNASEH2CQ8TDP1 164 aaKnown RBP12.22□□□□□ -0.45
CUX1-215ENST00000556210 FAM222BQ8WU58 562 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 NAV3Q8IVL0 2385 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 YPEL1O60688 119 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 SRSF7Q16629 238 aaKnown RBP eCLIP12.22□□□□□ -0.451e-8■■■■■ 28.4
CUX1-215ENST00000556210 SPATA45Q537H7 98 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 C1orf194Q5T5A4 169 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 LYPD2Q6UXB3 125 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 MMD2Q8IY49 270 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 Q8NFD4 153 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 YPEL2Q96QA6 119 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 MGST2Q99735 147 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 GGTLC1Q9BX51 225 aa12.22□□□□□ -0.45
CUX1-215ENST00000556210 GSX1Q9H4S2 264 aaPredicted RBP12.22□□□□□ -0.45
CUX1-215ENST00000556210 EFNB3Q15768 340 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 C19orf35Q6ZS72 473 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 TCTEX1D1Q8N7M0 179 aa12.21□□□□□ -0.45
CUX1-215ENST00000556210 IL19Q9UHD0 177 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms