RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SBSPONQ8IVN8 264 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 SGPP2Q8IWX5 399 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 SLC35G3Q8N808 338 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 PINX1Q96BK5 328 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 WDR89Q96FK6 387 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 MLXQ9UH92 298 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 TMEM56-RWDD3S4R434 201 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 CYB5BO43169 146 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 B3GALNT1O75752 331 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 ATG12O94817 140 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 CTSGP08311 255 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 FRMD6-AS1P0C7T7 363 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 RNASE2P10153 161 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 HOXA1P49639 335 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 CCR6P51684 374 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 AP3S2P59780 193 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 ERHP84090 104 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 ANKRD55Q3KP44 614 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 Q56UQ5 140 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 UXS1Q8NBZ7 420 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 ZNF114Q8NC26 417 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 DYNLRB2Q8TF09 96 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 GALNT14Q96FL9 552 aa8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 ZNF436Q9C0F3 470 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 MRPL36Q9P0J6 103 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-208ENST00000554165 IGHV4-30-4P0DP06 118 aa8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 FAUP35544 74 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 LCN12Q6JVE5 192 aa8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 BSCL2Q96G97 398 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 WFDC10AQ9H1F0 79 aa8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 FNDC4Q9H6D8 234 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 FLVCR2Q9UPI3 526 aa8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 KCNIP3Q9Y2W7 256 aa8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 NBEAL2Q6ZNJ1 2754 aa8.73□□□□□ -1.01
CCDC88C-208ENST00000554165 A8MWP6 167 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 INS-IGF2F8WCM5 200 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 CD7P09564 240 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 VAMP1P23763 118 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 SNCAP37840 140 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 MFAP4P55083 255 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 SPCS3P61009 180 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 DCTN2Q13561 401 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 GUCA2BQ16661 112 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 AARDQ4LEZ3 155 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 NMSQ5H8A3 153 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 PVRIGQ6DKI7 326 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 BTNL8Q6UX41 500 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 FAM219AQ8IW50 185 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 TMEM61Q8N0U2 210 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 OR1L6Q8NGR2 347 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 TMEM170AQ8WVE7 144 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 TMEM190Q8WZ59 177 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 SCGB3A2Q96PL1 93 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 PDCD10Q9BUL8 212 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 C20orf24Q9BUV8 137 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 NDUFA13Q9P0J0 144 aa8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 HUWE1Q7Z6Z7 4374 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-208ENST00000554165 IGHV3-49A0A0A0MS15 119 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 SCAF4O95104 1147 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 C8orf88P0DMB2 117 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 IL7P13232 177 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 BTCP35070 178 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 PPP1R1AQ13522 171 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 BSXQ3C1V8 233 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 TRIQKQ629K1 86 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 SPSB3Q6PJ21 355 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 LGI3Q8N145 548 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 IL22RA2Q969J5 263 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 ENY2Q9NPA8 101 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 C19orf73Q9NVV2 129 aa8.71□□□□□ -1.02
CCDC88C-208ENST00000554165 A0A0B4J2A0 478 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 CEBPZOSA8MTT3 80 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 NDUFA4O00483 81 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 NUPL2O15504 423 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 SULT1A3P0DMM9 295 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 SULT1A4P0DMN0 295 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 INPP1P49441 399 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 CD81P60033 236 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 TMEM128Q5BJH2 165 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 DEFB125Q8N687 156 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 OR2K2Q8NGT1 345 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 OR52E5Q8NH55 327 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 SLC25A21Q9BQT8 299 aaPredicted RBP8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 HEYLQ9NQ87 328 aaPredicted RBP8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 TECRQ9NZ01 308 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 SHPKQ9UHJ6 478 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 UFC1Q9Y3C8 167 aa8.7□□□□□ -1.02
CCDC88C-208ENST00000554165 IGHV3OR16-13A0A075B7E8 117 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 IGHV3-74A0A0B4J1X5 117 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 A6NHS1 94 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 PLA2G10O15496 165 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 GNG7O60262 68 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 YIF1AO95070 293 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 SFT2D2O95562 160 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 TMEM50AO95807 157 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 TNFRSF9Q07011 255 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 SMCO1Q147U7 214 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 GTSCR1Q86UQ5 136 aa8.69□□□□□ -1.02
CCDC88C-208ENST00000554165 CENPSQ8N2Z9 138 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms