RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 HTR2BP41595 481 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 RELQ04864 619 aaPredicted RBP10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 IZUMO4Q1ZYL8 232 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 NMSQ5H8A3 153 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 LCN12Q6JVE5 192 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 MARC2Q969Z3 335 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 MISP3Q96FF7 219 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 TMED3Q9Y3Q3 217 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 RPS10-NUDT3A0A1W2PQS6 291 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 K7EIM0 57 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 LYRM1O43325 122 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 TGOLN2O43493 480 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 LY86O95711 162 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 PRB2P02812 416 aaPredicted RBP10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 CLEC3BP05452 202 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 MFAP4P55083 255 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 ELLP55199 621 aaPredicted RBP10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 SCARB1Q8WTV0 552 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 GPR146Q96CH1 333 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 HIPK2Q9H2X6 1198 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 TECRQ9NZ01 308 aaKnown RBP10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 UFC1Q9Y3C8 167 aa10.98□□□□□ -0.65
CCDC88C-207ENST00000554051 CEBPZOSA8MTT3 80 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 FAM90A26D6RGX4 464 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 K7EIL1 84 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 NUPL2O15504 423 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 IGHV3-23P01764 117 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 HLA-AP01891 365 aaKnown RBP10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 NPBWR1P48145 328 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 MFAP2P55001 183 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 ATP5IP56385 69 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 PPP1R1AQ13522 171 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 BSXQ3C1V8 233 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 Q56UQ5 140 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 PVRIGQ6DKI7 326 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 SLC24A4Q8NFF2 622 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 COQ8AQ8NI60 647 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 DYNLRB2Q8TF09 96 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 ZNF436Q9C0F3 470 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 HEYLQ9NQ87 328 aaPredicted RBP10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 HSPB7Q9UBY9 170 aa10.97□□□□□ -0.65
CCDC88C-207ENST00000554051 I3L2K1 104 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 NDUFA4O00483 81 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 MT-CO2P00403 227 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 CSN3P07498 182 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 RNASE2P10153 161 aaKnown RBP10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 GP9P14770 177 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 BTCP35070 178 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 TNFRSF9Q07011 255 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 ZNF846Q147U1 533 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 MZT2BQ6NZ67 158 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 Q6ZRM9 215 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 DUSP18Q8NEJ0 188 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 OR1S1Q8NH92 325 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 RNASEH2CQ8TDP1 164 aaKnown RBP10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 TMEM190Q8WZ59 177 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 S4R3C0 116 aa10.96□□□□□ -0.65
CCDC88C-207ENST00000554051 WI2-2373I1.2A0A1W2PRP0 233 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 OR2T8A6NH00 312 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 C2orf70A6NJV1 201 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 GNG7O60262 68 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 MED6O75586 246 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 OR2C1O95371 312 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 SPNP16150 400 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 OPRK1P41145 380 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 C2orf83Q53S99 150 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 SPINK9Q5DT21 86 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 ETFRF1Q6IPR1 90 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 IL34Q6ZMJ4 242 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 LYZL2Q7Z4W2 148 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 UBAC2Q8NBM4 344 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 PINX1Q96BK5 328 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 C20orf85Q9H1P6 137 aa10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 DAZ1Q9NQZ3 744 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-207ENST00000554051 LINC00854A0A1B0GVQ3 168 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 ZNF320A2RRD8 509 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 IFNA21P01568 189 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 OR4E1P0C645 316 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 SLC25A4P12235 298 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 NPY1RP25929 384 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 BMI1P35226 326 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 DHRS2Q13268 280 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 ANKRD55Q3KP44 614 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 C4orf46Q504U0 113 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 LYG2Q86SG7 212 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 GTSCR1Q86UQ5 136 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 DTD1Q8TEA8 209 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 CIB3Q96Q77 187 aaPredicted RBP10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 PRR25Q96S07 402 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 PRR13Q9NZ81 148 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 U3KQ87 197 aa10.94□□□□□ -0.66
CCDC88C-207ENST00000554051 TMEM213A2RRL7 107 aa10.93□□□□□ -0.66
CCDC88C-207ENST00000554051 C9orf170A2RU37 121 aa10.93□□□□□ -0.66
CCDC88C-207ENST00000554051 FOLR2P14207 255 aa10.93□□□□□ -0.66
CCDC88C-207ENST00000554051 RPP30P78346 268 aaKnown RBP10.93□□□□□ -0.66
CCDC88C-207ENST00000554051 ASAH1Q13510 395 aa10.93□□□□□ -0.66
CCDC88C-207ENST00000554051 GINS3Q9BRX5 216 aa10.93□□□□□ -0.66
CCDC88C-207ENST00000554051 MRPL27Q9P0M9 148 aaKnown RBP10.93□□□□□ -0.66
CCDC88C-207ENST00000554051 SMAD5-AS1Q9Y6J3 95 aa10.93□□□□□ -0.66
CCDC88C-207ENST00000554051 TRAV30A0A087WSZ9 112 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms