RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 RHOBP62745 196 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 GAMTQ14353 236 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 AVPI1Q5T686 147 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 FAM122CQ6P4D5 195 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 REC114Q7Z4M0 266 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 MMD2Q8IY49 270 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 KIR3DL3Q8N743 410 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 HIST1H2BAQ96A08 127 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 SLC35E1Q96K37 410 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 SRSF8Q9BRL6 282 aaKnown RBP4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 CTDSP1Q9GZU7 261 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 ZNF430Q9H8G1 570 aaPredicted RBP4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 NAT8Q9UHE5 227 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 INSIG2Q9Y5U4 225 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 PUS1Q9Y606 427 aaKnown RBP eCLIP4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 ARL2-SNX15V9GYD0 113 aa4.83□□□□□ -1.64
VIPAS39-204ENST00000553576 IGF2RP11717 2491 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 SPTA1P02549 2419 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 LOC105371242A0A075B767 164 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 A0A1W2PPR1 153 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 ODF3BA8MYP8 253 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 OOSP1A8MZH6 123 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 C22orf46C9J442 243 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 OVOL3O00110 214 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 PDE6DO43924 150 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 CLN5O75503 358 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 VENTXO95231 258 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 OR2C1O95371 312 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 OR5G3P0C626 314 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 MYOD1P15172 320 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 AREGP15514 252 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 CTRB1P17538 263 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 REG1BP48304 166 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 RND2P52198 227 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 EFNA4P52798 201 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 WT1-ASQ06250 92 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 HNF4GQ14541 408 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 PSG5Q15238 335 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 PRSS8Q16651 343 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 TMEM241Q24JQ0 296 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 MIC13Q5XKP0 118 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 CTRB2Q6GPI1 263 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 ETFRF1Q6IPR1 90 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 HCP5Q6MZN7 132 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 CYP2G1PQ6ZSU1 146 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 STPG3Q8N7X2 389 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 THAP8Q8NA92 274 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 NPBQ8NG41 125 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 OR10W1Q8NGF6 305 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 GATAD1Q8WUU5 269 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 IGFBPL1Q8WX77 278 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 RITA1Q96K30 269 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 RNF2Q99496 336 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 SSX3Q99909 188 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 SSBP3Q9BWW4 388 aaPredicted RBP4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 SLC25A22Q9H936 323 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 DOK5Q9P104 306 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 DPM3Q9P2X0 92 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 POLR3KQ9Y2Y1 108 aaPredicted RBP4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 SIGLEC9Q9Y336 463 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 KLF2Q9Y5W3 355 aaPredicted RBP4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 NBASA2RRP1 2371 aa4.82□□□□□ -1.64
VIPAS39-204ENST00000553576 WNK2Q9Y3S1 2297 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 IGKV1OR2-108A0A075B7D4 117 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 A0A1W2PPI3 338 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 PSMB11A5LHX3 300 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 ZNF727A8MUV8 499 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 F6UZH7 168 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 CLDN34H7C241 214 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 PAGE4O60829 102 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 MT-CO2P00403 227 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 RAB5AP20339 215 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 GNLYP22749 145 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 HTR1DP28221 377 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 GCHFRP30047 84 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 CEACAM3P40198 252 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 GPR6P46095 362 aaPredicted RBP4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 RPL27AP46776 148 aaKnown RBP4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 SELENOTP62341 195 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 EBI3Q14213 229 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 TPTE2P1Q5T6R2 138 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 MINOS1Q5TGZ0 78 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 SPNS3Q6ZMD2 512 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 PQLC2Q6ZP29 291 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 MOB3BQ86TA1 216 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 PPP1R27Q86WC6 154 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 SYT8Q8NBV8 401 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 ABHD5Q8WTS1 349 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 RPEQ96AT9 228 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 ANAPC16Q96DE5 110 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 HINT2Q9BX68 163 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 TMEM167BQ9NRX6 74 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 MINOS1-NBL1R4GNA1 71 aa4.81□□□□□ -1.64
VIPAS39-204ENST00000553576 NAV3Q8IVL0 2385 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 ATRXP46100 2492 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 TRBV24-1A0A075B6N3 115 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 IGKV1D-37A0A075B6S9 117 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 IGLC7A0M8Q6 106 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 C1orf196B1AJZ1 125 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 C11orf94C9JXX5 98 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms