RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SMCO4Q9NRQ5 59 aa21.09■□□□□ 0.97
CCDC88C-205ENST00000553403 C7orf77A4D0Y5 90 aa21.08■□□□□ 0.96
CCDC88C-205ENST00000553403 LINC00869P0C866 280 aa21.08■□□□□ 0.96
CCDC88C-205ENST00000553403 HIST2H2BCQ6DN03 193 aa21.08■□□□□ 0.96
CCDC88C-205ENST00000553403 RPS10P5Q9NQ39 176 aa21.08■□□□□ 0.96
CCDC88C-205ENST00000553403 PUS1Q9Y606 427 aaKnown RBP eCLIP21.08■□□□□ 0.96
CCDC88C-205ENST00000553403 H3BQ15 152 aa21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 MOSP00540 346 aa21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 SNRNP70P08621 437 aaKnown RBP21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 DEFA4P12838 97 aa21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 CEBPGP53567 150 aa21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 MEF2BQ02080 365 aaPredicted RBP21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 MLANAQ16655 118 aa21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 FAM90A2PQ658T7 463 aa21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 NPBQ8NG41 125 aa21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 SRSF8Q9BRL6 282 aaKnown RBP21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 POLR3KQ9Y2Y1 108 aaPredicted RBP21.07■□□□□ 0.96
CCDC88C-205ENST00000553403 STAG3L2P0CL84 134 aa21.06■□□□□ 0.96
CCDC88C-205ENST00000553403 STAG3L3P0CL85 134 aa21.06■□□□□ 0.96
CCDC88C-205ENST00000553403 OR10J1P30954 320 aa21.06■□□□□ 0.96
CCDC88C-205ENST00000553403 RHOBP62745 196 aa21.06■□□□□ 0.96
CCDC88C-205ENST00000553403 TBL2Q9Y4P3 447 aaKnown RBP21.06■□□□□ 0.96
CCDC88C-205ENST00000553403 ARHGAP32A7KAX9 2087 aa21.06■□□□□ 0.96
CCDC88C-205ENST00000553403 IGKV1OR2-108A0A075B7D4 117 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 TOX4O94842 621 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 NDUFA3O95167 84 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 LGALS4P56470 323 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 AKIRIN2Q53H80 203 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 NIPSNAP3BQ9BS92 247 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 PIMREGQ9BSJ6 248 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 NBR2O15453 112 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 CXorf1O96002 111 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 CD81P60033 236 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 PLGLAQ15195 96 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 MMDQ15546 238 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 ETFRF1Q6IPR1 90 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 TVP23CQ96ET8 276 aa21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 FNDC4Q9H6D8 234 aaPredicted RBP21.05■□□□□ 0.96
CCDC88C-205ENST00000553403 A0A1W2PRD5 423 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 A0A1W2PRF3 423 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 A0A1W2PRM7 423 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 TEX22C9J3V5 150 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 NDUFS8O00217 210 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 GNB1P62873 340 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 IQCF2Q8IXL9 164 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 OR2T10Q8NGZ9 312 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 OR2T6Q8NHC8 308 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 EAF1Q96JC9 268 aaPredicted RBP21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 TBX15Q96SF7 602 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 C20orf24Q9BUV8 137 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 C19orf24Q9BVV8 132 aa21.04■□□□□ 0.96
CCDC88C-205ENST00000553403 TMEM250H0YL14 139 aa21.03■□□□□ 0.96
CCDC88C-205ENST00000553403 UBE2E1P51965 193 aa21.03■□□□□ 0.96
CCDC88C-205ENST00000553403 OR1P1Q8NH06 330 aa21.03■□□□□ 0.96
CCDC88C-205ENST00000553403 ABHD5Q8WTS1 349 aa21.03■□□□□ 0.96
CCDC88C-205ENST00000553403 SRSF12Q8WXF0 261 aaKnown RBP21.03■□□□□ 0.96
CCDC88C-205ENST00000553403 FAM168AQ92567 244 aa21.03■□□□□ 0.96
CCDC88C-205ENST00000553403 TUBA4BQ9H853 241 aa21.03■□□□□ 0.96
CCDC88C-205ENST00000553403 CORTO00230 105 aa21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 REG1AP05451 166 aa21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 AREGP15514 252 aa21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 PAX6P26367 422 aa21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 SSBP2P81877 361 aaPredicted RBP21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 SSX2Q16385 188 aa21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 THAP8Q8NA92 274 aa21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 NANPQ8TBE9 248 aa21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 ACY3Q96HD9 319 aa21.02■□□□□ 0.96
CCDC88C-205ENST00000553403 FCN1O00602 326 aa21.02■□□□□ 0.95
CCDC88C-205ENST00000553403 PAGE4O60829 102 aa21.02■□□□□ 0.95
CCDC88C-205ENST00000553403 TSPAN9O75954 239 aa21.02■□□□□ 0.95
CCDC88C-205ENST00000553403 CRYGCP07315 174 aa21.02■□□□□ 0.95
CCDC88C-205ENST00000553403 COL8A1P27658 744 aa21.02■□□□□ 0.95
CCDC88C-205ENST00000553403 CYP2G1PQ6ZSU1 146 aa21.02■□□□□ 0.95
CCDC88C-205ENST00000553403 C10orf105Q8TEF2 133 aa21.02■□□□□ 0.95
CCDC88C-205ENST00000553403 GATAD1Q8WUU5 269 aa21.02■□□□□ 0.95
CCDC88C-205ENST00000553403 EBI3Q14213 229 aa21.01■□□□□ 0.95
CCDC88C-205ENST00000553403 F11RQ9Y624 299 aaKnown RBP21.01■□□□□ 0.95
CCDC88C-205ENST00000553403 DOPEY1Q5JWR5 2465 aa21.01■□□□□ 0.95
CCDC88C-205ENST00000553403 MT-CO2P00403 227 aa21■□□□□ 0.95
CCDC88C-205ENST00000553403 ARL14EPLP0DKL9 152 aa21■□□□□ 0.95
CCDC88C-205ENST00000553403 AKR1C3P42330 323 aa21■□□□□ 0.95
CCDC88C-205ENST00000553403 SPNS3Q6ZMD2 512 aa21■□□□□ 0.95
CCDC88C-205ENST00000553403 DYNAPQ8N1N2 210 aa21■□□□□ 0.95
CCDC88C-205ENST00000553403 VWC2LB2RUY7 222 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 MFAP2P55001 183 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 PNRC1Q12796 327 aaPredicted RBP20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 C15orf54Q8N8G6 183 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 NPIPB3Q92617 1050 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 MALSU1Q96EH3 234 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 TXNDC17Q9BRA2 123 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 LPAR2Q9HBW0 351 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 SEPSECSQ9HD40 501 aaKnown RBP20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 MAST4O15021 2626 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 LRBAP50851 2863 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 HES1Q14469 280 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 CLEC2AQ6UVW9 174 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 Q8N6K4 173 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 MISP3Q96FF7 219 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 FUT9Q9Y231 359 aa20.99■□□□□ 0.95
CCDC88C-205ENST00000553403 NAV2Q8IVL1 2488 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms