RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 SPTAN1Q13813 2472 aaKnown RBP6.76□□□□□ -1.33
VPS29-203ENST00000546588 IGHV1-3A0A0C4DH29 117 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 A0A0D9SG52 128 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 A0A1W2PPE3 182 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 GAGE12BA1L429 117 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 GAGE12HA6NDE8 117 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 B4DSR2 109 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 RNASEK-C17orf49H0YIS7 233 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 ST8SIA3O43173 380 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 SPRY2O43597 315 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 MSMBP08118 114 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 USF1P22415 310 aaPredicted RBP6.76□□□□□ -1.33
VPS29-203ENST00000546588 NKX2-1P43699 371 aaPredicted RBP6.76□□□□□ -1.33
VPS29-203ENST00000546588 P2RY1P47900 373 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 SUMO2P61956 95 aaKnown RBP6.76□□□□□ -1.33
VPS29-203ENST00000546588 EBI3Q14213 229 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 COX19Q49B96 90 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 S100A7AQ86SG5 101 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 STPG2Q8N412 459 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 KCNRGQ8N5I3 272 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 HSD17B11Q8NBQ5 300 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 OR10X1Q8NGY0 326 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 OR4A5Q8NH83 315 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 THAP6Q8TBB0 222 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 CHRDL1Q9BU40 450 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 MRPL20Q9BYC9 149 aaKnown RBP6.76□□□□□ -1.33
VPS29-203ENST00000546588 CHIAQ9BZP6 476 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 MMP26Q9NRE1 261 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 TMEM14BQ9NUH8 114 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 ZNRD1Q9P1U0 126 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 ONECUT1Q9UBC0 465 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 FOXA2Q9Y261 457 aaPredicted RBP6.76□□□□□ -1.33
VPS29-203ENST00000546588 ZNF257Q9Y2Q1 563 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 WASHC3Q9Y3C0 194 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 WSB1Q9Y6I7 421 aa6.76□□□□□ -1.33
VPS29-203ENST00000546588 C15orf61A6NNL5 157 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 KRBOX1C9JBD0 128 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 E5RGE8 158 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 TSTD3H0UI37 97 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 J3QLI3 93 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 K7EP13 123 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 FCGR3BO75015 233 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 EIF3GO75821 320 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS29-203ENST00000546588 HRASP01112 189 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 IGLV2-23P01705 113 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 APOA2P02652 100 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 GAPDHP04406 335 aaKnown RBP6.75□□□□□ -1.33
VPS29-203ENST00000546588 IGKV1-16P04430 117 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 METTL15P1P0C7V9 234 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 CXCL2P19875 107 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 C4BPBP20851 252 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 HTR1DP28221 377 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 S100A11P31949 105 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 CEACAM3P40198 252 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 DYNLT3P51808 116 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 AKR1C2P52895 323 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 LINC00205P59089 165 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 LCN2P80188 198 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 HAGHQ16775 308 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 RTL8BQ17RB0 113 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 TMEM249Q2WGJ8 235 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 BEAN1Q3B7T3 259 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 TPTE2P1Q5T6R2 138 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 ACOT7LQ6ZUV0 252 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 MRPL52Q86TS9 123 aaKnown RBP6.75□□□□□ -1.33
VPS29-203ENST00000546588 Q8N6K4 173 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 VSTM2AQ8TAG5 236 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 RNASE8Q8TDE3 154 aaKnown RBP6.75□□□□□ -1.33
VPS29-203ENST00000546588 PRR25Q96S07 402 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 RAB40CQ96S21 281 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 FOXC2Q99958 501 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 LYRM2Q9NU23 88 aaPredicted RBP6.75□□□□□ -1.33
VPS29-203ENST00000546588 OR5AC2Q9NZP5 309 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 DPM3Q9P2X0 92 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 NSG2Q9Y328 171 aa6.75□□□□□ -1.33
VPS29-203ENST00000546588 HELZ2Q9BYK8 2649 aaKnown RBP6.75□□□□□ -1.33
VPS29-203ENST00000546588 C13orf42A0A1B0GVH6 325 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 SH2D7A6NKC9 451 aaPredicted RBP6.74□□□□□ -1.33
VPS29-203ENST00000546588 TEX46H3BTG2 121 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 KBTBD11O94819 623 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 NDUFA3O95167 84 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 OR2C1O95371 312 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 FSHBP01225 129 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 IGHV3-7P01780 117 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 ARG1P05089 322 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 CRYGBP07316 175 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 ZNF25P17030 456 aaPredicted RBP6.74□□□□□ -1.33
VPS29-203ENST00000546588 G6PCP35575 357 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 LGALS7P47929 136 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 PAX9P55771 341 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 BAXQ07812 192 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 BTN1A1Q13410 526 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 DIAPH2-AS1Q14236 149 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 MRGPRG-AS1Q2M3A8 158 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 OR4A47Q6IF82 309 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 ACSM6Q6P461 480 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 TMEM88Q6PEY1 159 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 ZNF546Q86UE3 836 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 BOD1L2Q8IYS8 172 aa6.74□□□□□ -1.33
VPS29-203ENST00000546588 OR1S1Q8NH92 325 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms