RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 OSR1Q8TAX0 266 aaPredicted RBP12.96□□□□□ -0.33
CUX1-211ENST00000546411 SSC4DQ8WTU2 575 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 MBD3L1Q8WWY6 194 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 RBM14Q96PK6 669 aaKnown RBP12.96□□□□□ -0.33
CUX1-211ENST00000546411 CLEC7AQ9BXN2 247 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 XIRP2A4UGR9 3374 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 A0A1W2PNU3 283 aaPredicted RBP12.96□□□□□ -0.33
CUX1-211ENST00000546411 CGB1A6NKQ9 187 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 OR2J3O76001 311 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 HOXA5P20719 270 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 RNASE7Q9H1E1 156 aaKnown RBP12.96□□□□□ -0.33
CUX1-211ENST00000546411 KLHDC1Q8N7A1 406 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 SEPSECSQ9HD40 501 aaKnown RBP12.96□□□□□ -0.34
CUX1-211ENST00000546411 LINC00312Q9Y6C7 94 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 TRIOO75962 3097 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 A0A087WWC5 75 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 IGHV3-23P01764 117 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 PYYP10082 97 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 FCER1GP30273 86 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 APOBEC3AP31941 199 aaPredicted RBP12.96□□□□□ -0.34
CUX1-211ENST00000546411 Q6ZN92 141 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 Q6ZS49 121 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 ATOH7Q8N100 152 aa12.96□□□□□ -0.34
CUX1-211ENST00000546411 DIRC3C9JPN6 131 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 LY6HO94772 140 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 IGHG3P01860 377 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 BRS3P32247 399 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 FOXA3P55318 350 aaPredicted RBP12.95□□□□□ -0.34
CUX1-211ENST00000546411 EFNB3Q15768 340 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 MBNL3Q9NUK0 354 aaKnown RBP12.95□□□□□ -0.34
CUX1-211ENST00000546411 C5orf17Q8NAS9 161 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 PGLYRP4Q96LB8 373 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 TRBV6-6A0A0A6YYG2 114 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 C1QL4Q86Z23 238 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 OCC1Q8TAD7 63 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 GGTLC1Q9BX51 225 aa12.95□□□□□ -0.34
CUX1-211ENST00000546411 UPK2O00526 184 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 GFRA3O60609 400 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 DLX1P56177 255 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 TMEM177Q53S58 311 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 NDUFA2O43678 99 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 IGKV1-16P04430 117 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 GOLT1AQ6ZVE7 132 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 TRAV5A0A0B4J249 113 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 VENTXO95231 258 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 DDTP30046 118 aa12.94□□□□□ -0.34
CUX1-211ENST00000546411 IGHV3-49A0A0A0MS15 119 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 C5orf52A6NGY3 159 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 B9A039 149 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 CA1P00915 261 aaPredicted RBP12.93□□□□□ -0.34
CUX1-211ENST00000546411 OR5AL1P0C617 328 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 MBNL2Q5VZF2 373 aaKnown RBP12.93□□□□□ -0.34
CUX1-211ENST00000546411 NEUROG1Q92886 237 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 RPUSD1Q9UJJ7 312 aaKnown RBP12.93□□□□□ -0.34
CUX1-211ENST00000546411 VAMP3Q15836 100 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 TMEM144Q7Z5S9 345 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 TMEM183AQ8IXX5 376 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 RNASE6Q93091 150 aaKnown RBP12.93□□□□□ -0.34
CUX1-211ENST00000546411 CBLN4Q9NTU7 201 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 ELOVL5Q9NYP7 299 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 LOC389332A0A1B0GUA5 103 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 TM4SF5O14894 197 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 ANKRD11Q6UB99 2663 aaPredicted RBP12.93□□□□□ -0.34
CUX1-211ENST00000546411 NEU1Q99519 415 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 MUC21A0A0G2JKD1 596 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 MUC21A0A140T8X8 626 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 C15orf62A8K5M9 175 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 IL4P05112 153 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 NBEAP1P0C6P0 100 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 TMPRSS3P57727 454 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 NHLH1Q02575 133 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 C21orf62-AS1Q17RA5 79 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 MUC21Q5SSG8 566 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 SPACA3Q8IXA5 215 aa12.93□□□□□ -0.34
CUX1-211ENST00000546411 A8MWL6 223 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 M0R143 59 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 RBFOX2O43251 390 aaKnown RBP eCLIP12.92□□□□□ -0.346e-7■■■□□ 18.3
CUX1-211ENST00000546411 C1RLQ9NZP8 487 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 UFC1Q9Y3C8 167 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 LIPFP07098 398 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 OR4A5Q8NH83 315 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 FOXH1O75593 365 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 GNG5P63218 68 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 PRR30Q53SZ7 412 aaPredicted RBP12.92□□□□□ -0.34
CUX1-211ENST00000546411 PLA2G2CQ5R387 149 aa12.92□□□□□ -0.34
CUX1-211ENST00000546411 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.92□□□□□ -0.34
CUX1-211ENST00000546411 ISLRO14498 428 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 PPOXP50336 477 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 BPIFA4PQ86YQ2 179 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 GBGT1Q8N5D6 347 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 A0A0G2JNJ9 132 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 PLA2G2EQ9NZK7 142 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 Q9UFV3 132 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 RAXQ9Y2V3 346 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 TMEM131Q92545 1883 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 MUC22E2RYF6 1773 aaPredicted RBP12.91□□□□□ -0.34
CUX1-211ENST00000546411 LOC105371242A0A075B767 164 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 FAM162BQ5T6X4 162 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 FAM90A2PQ658T7 463 aa12.91□□□□□ -0.34
CUX1-211ENST00000546411 MGST2Q99735 147 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms