RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 STHQ8IWL8 128 aa12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 PRNDQ9UKY0 176 aa12.87□□□□□ -0.35
CLSTN3-214ENST00000542663 TRAV2A0A0B4J234 112 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 IGHV3-66A0A0C4DH42 116 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 DNASE2O00115 360 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 MT-CO2P00403 227 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 POM121L12Q8N7R1 296 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 ZNF114Q8NC26 417 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 GINS3Q9BRX5 216 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 AUNIPQ9H7T9 357 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 ZFAND3Q9H8U3 227 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 CELA1Q9UNI1 258 aa12.86□□□□□ -0.35
CLSTN3-214ENST00000542663 HSPG2P98160 4391 aa12.85□□□□□ -0.35
CLSTN3-214ENST00000542663 MEIS3P1A6NDR6 274 aa12.85□□□□□ -0.35
CLSTN3-214ENST00000542663 AMBPP02760 352 aa12.85□□□□□ -0.35
CLSTN3-214ENST00000542663 HERV-K104P61576 105 aa12.85□□□□□ -0.35
CLSTN3-214ENST00000542663 SCRT1Q9BWW7 348 aa12.85□□□□□ -0.35
CLSTN3-214ENST00000542663 NACAE9PAV3 2078 aa12.85□□□□□ -0.35
CLSTN3-214ENST00000542663 M0R2N4 97 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 GNG7O60262 68 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 EIF4EP06730 217 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 DHRS11Q6UWP2 260 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 CSNK1G2-AS1Q8NCQ2 148 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 DUSP18Q8NEJ0 188 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 BORCS5Q969J3 196 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 MOB3AQ96BX8 217 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 FKBP11Q9NYL4 201 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 EHFQ9NZC4 300 aa12.84□□□□□ -0.35
CLSTN3-214ENST00000542663 A0A0A6YYH2 397 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 A6NJ64 397 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 CLEC2LP0C7M8 214 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 SDC2P34741 201 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 RFX2P48378 723 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 SCAND1P57086 179 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 RPL11P62913 178 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 C12orf74Q32Q52 190 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 TMEM41BQ5BJD5 291 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 UBE2UQ5VVX9 321 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 MORN3Q6PF18 240 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 ZNF767PQ75MW2 155 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 PINX1Q96BK5 328 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 ZNF2Q9BSG1 426 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 FXYD6Q9H0Q3 95 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 CLEC5AQ9NY25 188 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 RABAC1Q9UI14 185 aa12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 PUS1Q9Y606 427 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLSTN3-214ENST00000542663 DEFB131BA0A096LNP1 70 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 A0A1B0GU03 582 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 KNCNA6PVL3 124 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 K7EQG2 157 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 P0DMU3 169 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 FAM231AP0DMU4 169 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 FAM231CP0DMU5 169 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 SPP1P10451 314 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 CBX5P45973 191 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 MXD1Q05195 221 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 TSC22D3Q99576 134 aa12.82□□□□□ -0.36
CLSTN3-214ENST00000542663 PRCDQ00LT1 54 aa12.81□□□□□ -0.36
CLSTN3-214ENST00000542663 ZNF600Q6ZNG1 722 aa12.81□□□□□ -0.36
CLSTN3-214ENST00000542663 TSPAN14Q8NG11 270 aa12.81□□□□□ -0.36
CLSTN3-214ENST00000542663 GRAMD2BQ96HH9 432 aa12.81□□□□□ -0.36
CLSTN3-214ENST00000542663 SEC22AQ96IW7 307 aa12.81□□□□□ -0.36
CLSTN3-214ENST00000542663 CNBD2Q96M20 576 aa12.81□□□□□ -0.36
CLSTN3-214ENST00000542663 RNF167Q9H6Y7 350 aa12.81□□□□□ -0.36
CLSTN3-214ENST00000542663 BLOC1S6Q9UL45 172 aa12.81□□□□□ -0.36
CLSTN3-214ENST00000542663 IGKV1-39P01597 117 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 IGKV1D-39P04432 117 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 LGALS9BQ3B8N2 356 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 IDNKQ5T6J7 187 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 STXBP6Q8NFX7 210 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 DCANP1Q8TF63 244 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 DIABLOQ9NR28 239 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 TBC1D24Q9ULP9 559 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 ANAPC10Q9UM13 185 aa12.8□□□□□ -0.36
CLSTN3-214ENST00000542663 GPR31O00270 319 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 TMEM50AO95807 157 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 PMP2P02689 132 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 ZNF688P0C7X2 276 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 PSMB9P28065 219 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 ZNF575Q86XF7 245 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 CMTM1Q8IZ96 169 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 CENPSQ8N2Z9 138 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 NDUFAF3Q9BU61 184 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 VCX3BQ9H321 246 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 IFT46Q9NQC8 304 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 SSR3Q9UNL2 185 aa12.79□□□□□ -0.36
CLSTN3-214ENST00000542663 NPBWR1P48145 328 aa12.78□□□□□ -0.36
CLSTN3-214ENST00000542663 HSPE1P61604 102 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-214ENST00000542663 ACTL10Q5JWF8 245 aa12.78□□□□□ -0.36
CLSTN3-214ENST00000542663 Q6ZR54 194 aa12.78□□□□□ -0.36
CLSTN3-214ENST00000542663 OR4A16Q8NH70 328 aa12.78□□□□□ -0.36
CLSTN3-214ENST00000542663 TMEM231Q9H6L2 316 aa12.78□□□□□ -0.36
CLSTN3-214ENST00000542663 NAT1P18440 290 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 NPPCP23582 126 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 CRYBB3P26998 211 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 PPP5CP53041 499 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 GABARAPL2P60520 117 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 PHLDA2Q53GA4 152 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 SPINK9Q5DT21 86 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 IZUMO2Q6UXV1 221 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms