RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 C2orf83Q53S99 150 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 NOXA1Q86UR1 476 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 FAM223AQ8IWN6 122 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 ZNF491Q8N8L2 437 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 SLC24A4Q8NFF2 622 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 MISP3Q96FF7 219 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 WDR89Q96FK6 387 aaPredicted RBP9.02□□□□□ -0.97
YBX3-213ENST00000542641 USMG5Q96IX5 58 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 UBE2E2Q96LR5 201 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 RAB40CQ96S21 281 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 CITED1Q99966 193 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 ZNF436Q9C0F3 470 aaPredicted RBP9.02□□□□□ -0.97
YBX3-213ENST00000542641 FBXL7Q9UJT9 491 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 KLK9Q9UKQ9 250 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 RCL1Q9Y2P8 373 aaKnown RBP9.02□□□□□ -0.97
YBX3-213ENST00000542641 A0A1W2PRX2 142 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 K7EPK0 472 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 L7N2F9 121 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 NDUFB8O95169 186 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 RLN2P04090 185 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 PVALBP20472 110 aaPredicted RBP9.01□□□□□ -0.97
YBX3-213ENST00000542641 NPY1RP25929 384 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 CDX1P47902 265 aaPredicted RBP9.01□□□□□ -0.97
YBX3-213ENST00000542641 ATP5IP56385 69 aaPredicted RBP9.01□□□□□ -0.97
YBX3-213ENST00000542641 RAB11AP62491 216 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 RPL23AP62750 156 aaKnown RBP9.01□□□□□ -0.97
YBX3-213ENST00000542641 VAMP2P63027 116 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 KIAA0141Q14154 515 aaPredicted RBP9.01□□□□□ -0.97
YBX3-213ENST00000542641 C15orf32Q32M92 178 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 LRRC37A5PQ49AS3 106 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 SPANXN5Q5MJ07 72 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 SHISA2Q6UWI4 295 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 MYOZ3Q8TDC0 251 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 PPP1R1CQ8WVI7 109 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 SMIM8Q96KF7 97 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 PSENENQ9NZ42 101 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 PAIP2BQ9ULR5 123 aaKnown RBP9.01□□□□□ -0.97
YBX3-213ENST00000542641 COL6A5A8TX70 2615 aa9.01□□□□□ -0.97
YBX3-213ENST00000542641 hCG_2014768A0A024R1R8 64 aa9□□□□□ -0.97
YBX3-213ENST00000542641 NUDT19A8MXV4 375 aa9□□□□□ -0.97
YBX3-213ENST00000542641 H3BP45 60 aa9□□□□□ -0.97
YBX3-213ENST00000542641 CORTO00230 105 aa9□□□□□ -0.97
YBX3-213ENST00000542641 TMEM50AO95807 157 aa9□□□□□ -0.97
YBX3-213ENST00000542641 IGHV3-11P01762 117 aa9□□□□□ -0.97
YBX3-213ENST00000542641 IFNA4P05014 189 aa9□□□□□ -0.97
YBX3-213ENST00000542641 PAX9P55771 341 aa9□□□□□ -0.97
YBX3-213ENST00000542641 TAS2R30P59541 319 aa9□□□□□ -0.97
YBX3-213ENST00000542641 NSUN5P1Q3KNT7 163 aa9□□□□□ -0.97
YBX3-213ENST00000542641 NDUFA11Q86Y39 141 aa9□□□□□ -0.97
YBX3-213ENST00000542641 TMEM170AQ8WVE7 144 aa9□□□□□ -0.97
YBX3-213ENST00000542641 PINX1Q96BK5 328 aaKnown RBP9□□□□□ -0.97
YBX3-213ENST00000542641 OR5B12Q96R08 314 aa9□□□□□ -0.97
YBX3-213ENST00000542641 STRAPQ9Y3F4 350 aaKnown RBP9□□□□□ -0.97
YBX3-213ENST00000542641 IGHV3-21A0A0B4J1V1 117 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 C15orf62A8K5M9 175 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 DEDDO75618 318 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 MPC2O95563 127 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 GIPP09681 153 aaPredicted RBP8.99□□□□□ -0.97
YBX3-213ENST00000542641 OR8U8P0C7N1 319 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 PET100P0DJ07 73 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 BCAP31P51572 246 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 EXOSC2Q13868 293 aaKnown RBP8.99□□□□□ -0.97
YBX3-213ENST00000542641 PVRIGQ6DKI7 326 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 C18orf65Q6ZTR6 163 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 KLHL30-AS1Q8NEE0 82 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 RNASEH2CQ8TDP1 164 aaKnown RBP8.99□□□□□ -0.97
YBX3-213ENST00000542641 VN1R17PQ8TDU5 208 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 C4orf3Q8WVX3 66 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 ASB13Q8WXK3 278 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 EEF1AKMT3Q96AZ1 226 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 CXorf58Q96LI9 332 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 OR4C12Q96R67 309 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 GNB4Q9HAV0 340 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 S4R3C0 116 aa8.99□□□□□ -0.97
YBX3-213ENST00000542641 TENM1Q9UKZ4 2725 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 TRBV7-1A0A0A6YYK4 115 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 MFSD2BA6NFX1 497 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 ADARB2-AS1A8MUL3 147 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 E5RGE8 158 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 H0YIZ8 118 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 I3L2K1 104 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 K7EIM0 57 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 TSC22D2O75157 780 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 MT-CO2P00403 227 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 IGHV3-23P01764 117 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 OPRK1P41145 380 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 CAV2P51636 162 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 RAP2BP61225 183 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 ZNF343Q6P1L6 599 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 ETV3LQ6ZN32 361 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 C8orf86Q6ZUL3 223 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 SCARB1Q8WTV0 552 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 CHAC2Q8WUX2 184 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 C11orf1Q9H5F2 150 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 OR5AC2Q9NZP5 309 aa8.98□□□□□ -0.97
YBX3-213ENST00000542641 A0A1B0GVG6 124 aa8.97□□□□□ -0.97
YBX3-213ENST00000542641 RPS10-NUDT3A0A1W2PQS6 291 aa8.97□□□□□ -0.97
YBX3-213ENST00000542641 ANKRD34BA5PLL1 514 aa8.97□□□□□ -0.97
YBX3-213ENST00000542641 IGHV3-48P01763 117 aa8.97□□□□□ -0.97
YBX3-213ENST00000542641 LGALS1P09382 135 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms