RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 SRSF9Q13242 221 aaKnown RBP eCLIP11.69□□□□□ -0.54
USP3-204ENST00000540797 CENPWQ5EE01 88 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 MINOS1Q5TGZ0 78 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 TMEM219Q86XT9 240 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 DUX3Q96PT4 197 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 MAP1LC3AQ9H492 121 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 MINOS1-NBL1R4GNA1 71 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 NEU1Q99519 415 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 J3QKU1 62 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 HERPUD1Q15011 391 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 BPESC1Q9GZL8 116 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 TRAV41A0A0B4J266 112 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 TPTE2P1Q5T6R2 138 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 SAMD13Q5VXD3 122 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 MLNRO43193 412 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 NUDT3O95989 172 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 FAM209BQ5JX69 171 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 ZNF525Q8N782 197 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 TBX15Q96SF7 602 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 PVRIGQ6DKI7 326 aa11.68□□□□□ -0.54
USP3-204ENST00000540797 F8VVB4 439 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 F8VWA3 439 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 AGAP20933 346 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 PRCDQ00LT1 54 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 ZNF600Q6ZNG1 722 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 ZNF502Q8TBZ5 544 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 GAFA1Q96PS6 74 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 PRO1933Q9H354 126 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 DCAF16Q9NXF7 216 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 CACNA1DQ01668 2161 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 OOSP1A8MZH6 123 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 J3QR89 54 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 M0R1W7 72 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 FREM3P0C091 2139 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 TRAV14DV4A0A0A6YYC5 116 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 M0R3E3 92 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 PSMB2P49721 201 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 LDLRAD2Q5SZI1 272 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 MIR17HGQ75NE6 70 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 OR1N2Q8NGR9 330 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 LINC01587Q99440 93 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 TSC2P49815 1807 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 H3BUX3 64 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 NAT1P18440 290 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 ASIPP42127 132 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 SRSF7Q16629 238 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP3-204ENST00000540797 FOXL2NBQ6ZUU3 175 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 LINC01356Q8N9X3 169 aa11.67□□□□□ -0.54
USP3-204ENST00000540797 TRAV20A0A0B4J274 112 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 IGHV1-3A0A0C4DH29 117 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 ZNF324O75467 553 aaPredicted RBP11.66□□□□□ -0.54
USP3-204ENST00000540797 MIEN1Q9BRT3 115 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 ROS1P08922 2347 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 NPFFO15130 113 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 TCF24Q7RTU0 167 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 RNF125Q96EQ8 232 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 BET1LQ9NYM9 111 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 A0A0B4J293 547 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 PSMB11A5LHX3 300 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 HGFACQ04756 655 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 CBY3A6NI87 242 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 TMEM42Q69YG0 159 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 PEX7O00628 323 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 ZFP30Q9Y2G7 519 aa11.66□□□□□ -0.54
USP3-204ENST00000540797 TMEM250H0YL14 139 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 LYRM7Q5U5X0 104 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 STHQ8IWL8 128 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 M0R381 172 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 EMP1P54849 157 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 SFRP2Q96HF1 295 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 MRPL18Q9H0U6 180 aaKnown RBP11.65□□□□□ -0.54
USP3-204ENST00000540797 PROK2Q9HC23 129 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 A6NNC1 897 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 FAM90A9PA6NNJ1 464 aa11.65□□□□□ -0.54
USP3-204ENST00000540797 SPTAN1Q13813 2472 aaKnown RBP11.65□□□□□ -0.55
USP3-204ENST00000540797 TMEM262E9PQX1 116 aa11.65□□□□□ -0.55
USP3-204ENST00000540797 RNASE4P34096 147 aaKnown RBP11.65□□□□□ -0.55
USP3-204ENST00000540797 KIR2DL4Q99706 377 aa11.65□□□□□ -0.55
USP3-204ENST00000540797 Q9H3A6 140 aa11.65□□□□□ -0.55
USP3-204ENST00000540797 IGKV3OR2-268A0A0C4DH90 116 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 NDUFS8O00217 210 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 LYPD2Q6UXB3 125 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 OR4C46A6NHA9 309 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 RNF223E7ERA6 249 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 GGCTO75223 188 aaKnown RBP11.64□□□□□ -0.55
USP3-204ENST00000540797 TMEM155Q4W5P6 130 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 PUSL1Q8N0Z8 303 aaKnown RBP11.64□□□□□ -0.55
USP3-204ENST00000540797 TMEM167AQ8TBQ9 72 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 M0R143 59 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 OTX1P32242 354 aaPredicted RBP11.64□□□□□ -0.55
USP3-204ENST00000540797 PAX8Q06710 450 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 ZNF506Q5JVG8 444 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 PLXNA4Q9HCM2 1894 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 IGKV1D-17A0A075B6S4 117 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 CEACAM8P31997 349 aaPredicted RBP11.64□□□□□ -0.55
USP3-204ENST00000540797 PRSS8Q16651 343 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 OR10W1Q8NGF6 305 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 ZNF257Q9Y2Q1 563 aa11.64□□□□□ -0.55
USP3-204ENST00000540797 HTN3P15516 51 aa11.63□□□□□ -0.55
USP3-204ENST00000540797 SLC50A1Q9BRV3 221 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms