RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SLC25A48Q6ZT89 311 aaKnown RBP7.36□□□□□ -1.23
YBX3-208ENST00000540447 RPP25LQ8N5L8 163 aaKnown RBP7.36□□□□□ -1.23
YBX3-208ENST00000540447 CXorf51AA0A1B0GTR3 108 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 GHRHP01286 108 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 EFNB3Q15768 340 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 FAM27BQ5VT28 67 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 NRTNQ99748 197 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 CFHR5Q9BXR6 569 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 TWSG1Q9GZX9 223 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 PLCH1Q4KWH8 1693 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 A0A1B0GUL6 1792 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 A0A1W2PPV9 198 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 LINC01549A6NIU2 74 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 NPFFO15130 113 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 GATA2P23769 480 aaPredicted RBP7.35□□□□□ -1.23
YBX3-208ENST00000540447 TCF15Q12870 199 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 IGHV3OR15-7A0A075B7D8 119 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 IGHV1-24A0A0C4DH33 117 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 H7C1H1 209 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 ASIPP42127 132 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 UTF1Q5T230 341 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 METTL26Q96S19 204 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 OTORQ9NRC9 128 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 NPIPB5A8MRT5 1133 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 K7ERJ3 54 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 SLC25A20O43772 301 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 TCTEX1D4Q5JR98 221 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 RSPO2Q6UXX9 243 aaPredicted RBP7.35□□□□□ -1.23
YBX3-208ENST00000540447 AMN1Q8IY45 258 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 CEND1Q8N111 149 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 RNF183Q96D59 192 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 INAFM2P0DMQ5 153 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 SYNJ2BPP57105 145 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 LAMB1P07942 1786 aa7.35□□□□□ -1.23
YBX3-208ENST00000540447 IGHV3-64A0A075B6Q5 118 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 REG1AP05451 166 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 IL9P15248 144 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 GCSAMQ8N6F7 178 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 CCL17Q92583 94 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 MGST3O14880 152 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 IGLC1P0CG04 106 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 VDAC2P45880 294 aaPredicted RBP7.34□□□□□ -1.23
YBX3-208ENST00000540447 NPC2P61916 151 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 RNF115Q9Y4L5 304 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 VWC2LB2RUY7 222 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 F2RL2O00254 374 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 TIAF1O95411 115 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 YPEL3P61236 119 aaPredicted RBP7.34□□□□□ -1.23
YBX3-208ENST00000540447 RBX1P62877 108 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 HGFACQ04756 655 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 EGR4Q05215 589 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 GUSBP11Q6P575 273 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 SLC25A47Q6Q0C1 308 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 PRRC2BQ5JSZ5 2229 aaKnown RBP7.34□□□□□ -1.23
YBX3-208ENST00000540447 CKAP5Q14008 2032 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 PSG4Q00888 419 aa7.34□□□□□ -1.23
YBX3-208ENST00000540447 SARAFQ96BY9 339 aa7.34□□□□□ -1.24
YBX3-208ENST00000540447 DUX5Q96PT3 197 aa7.34□□□□□ -1.24
YBX3-208ENST00000540447 TRAV13-1A0A0B4J241 112 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 IGKV3OR2-268A0A0C4DH90 116 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 J3QRE1 110 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 IFI27P40305 119 aaPredicted RBP7.33□□□□□ -1.24
YBX3-208ENST00000540447 RBMY1FQ15415 496 aaKnown RBP7.33□□□□□ -1.24
YBX3-208ENST00000540447 PPP1R32Q7Z5V6 425 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 UCN2Q96RP3 112 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 WDR83OSQ9Y284 106 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 C17orf98A8MV24 154 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 SIVA1O15304 175 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 TOMM40O96008 361 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 MDP1Q86V88 176 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 C3orf56Q8N813 242 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 RNF7Q9UBF6 113 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 OTOFQ9HC10 1997 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 FOXH1O75593 365 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 MPV17P39210 176 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 OR11H6Q8NGC7 330 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 OVOL2Q9BRP0 275 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 TJP1Q07157 1748 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 KLRD1Q13241 179 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 PEAR1Q5VY43 1037 aaPredicted RBP7.33□□□□□ -1.24
YBX3-208ENST00000540447 CACNA1DQ01668 2161 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 GATD1Q8NB37 220 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 PLEKHB2Q96CS7 222 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 MRPL20Q9BYC9 149 aaKnown RBP7.33□□□□□ -1.24
YBX3-208ENST00000540447 C1RLQ9NZP8 487 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 JPT1Q9UK76 154 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 AKAP11Q9UKA4 1901 aa7.33□□□□□ -1.24
YBX3-208ENST00000540447 BRK1Q8WUW1 75 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 PHLDA1Q8WV24 401 aaPredicted RBP7.32□□□□□ -1.24
YBX3-208ENST00000540447 TMEM171Q8WVE6 324 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 FBLN5Q9UBX5 448 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 PYYP10082 97 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 COL9A1P20849 921 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 PTGDSP41222 190 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 FAM159AQ6UWV7 190 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 C17orf99Q6UX52 265 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 LHFPL1Q86WI0 220 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 KNTC1P50748 2209 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 MESP2Q0VG99 397 aa7.32□□□□□ -1.24
YBX3-208ENST00000540447 EBLN2Q6P2I7 272 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms