RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PACRGQ96M98 296 aaPredicted RBP13.71□□□□□ -0.21
USP28-208ENST00000540438 PARD6GQ9BYG4 376 aaPredicted RBP13.71□□□□□ -0.21
USP28-208ENST00000540438 K7EN84 100 aa13.71□□□□□ -0.22
USP28-208ENST00000540438 CBLN1P23435 193 aa13.71□□□□□ -0.22
USP28-208ENST00000540438 HIST1H2BLQ99880 126 aa13.71□□□□□ -0.22
USP28-208ENST00000540438 LSM4Q9Y4Z0 139 aaKnown RBP13.71□□□□□ -0.22
USP28-208ENST00000540438 SHISA9B4DS77 424 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 SEC14L6B5MCN3 397 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 H0YJW9 148 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 NUPR1O60356 82 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 LINC00869P0C866 280 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 MGST1P10620 155 aaKnown RBP13.7□□□□□ -0.22
USP28-208ENST00000540438 TMEM256Q8N2U0 113 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 MISP3Q96FF7 219 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 FNDC4Q9H6D8 234 aaPredicted RBP13.7□□□□□ -0.22
USP28-208ENST00000540438 ZNF430Q9H8G1 570 aaPredicted RBP13.7□□□□□ -0.22
USP28-208ENST00000540438 PKD1L2Q7Z442 2459 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 KIAA1644Q3SXP7 199 aa13.7□□□□□ -0.22
USP28-208ENST00000540438 FOXA2Q9Y261 457 aaPredicted RBP13.7□□□□□ -0.22
USP28-208ENST00000540438 OR5G3P0C626 314 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 LINC00312Q9Y6C7 94 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 PHOX2AO14813 284 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 CXorf1O96002 111 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 ORM2P19652 201 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 LOXP28300 417 aaPredicted RBP13.69□□□□□ -0.22
USP28-208ENST00000540438 RPL8P62917 257 aaKnown RBP13.69□□□□□ -0.22
USP28-208ENST00000540438 LRRC10Q5BKY1 277 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 PQLC2Q6ZP29 291 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 DMRTC2Q8IXT2 367 aaPredicted RBP13.69□□□□□ -0.22
USP28-208ENST00000540438 BLNKQ8WV28 456 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 APOA2P02652 100 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 AREGP15514 252 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 PFDN5Q99471 154 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 SSBP3Q9BWW4 388 aaPredicted RBP13.69□□□□□ -0.22
USP28-208ENST00000540438 SERTAD4Q9NUC0 356 aa13.69□□□□□ -0.22
USP28-208ENST00000540438 RNASE2P10153 161 aaKnown RBP13.68□□□□□ -0.22
USP28-208ENST00000540438 PRCDQ00LT1 54 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 FAM209BQ5JX69 171 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 IGF2-ASQ6U949 168 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 ZNF503Q96F45 646 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 GAL3ST2Q9H3Q3 398 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 TRBV24-1A0A075B6N3 115 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 MDFIC2A0A1B0GVS7 189 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 CCL21O00585 134 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 RHOBP62745 196 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 SFRP2Q96HF1 295 aa13.68□□□□□ -0.22
USP28-208ENST00000540438 FAM103A1Q9BTL3 118 aaKnown RBP13.68□□□□□ -0.22
USP28-208ENST00000540438 IGHV1-69-2A0A0G2JMI3 117 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 SIAH2O43255 324 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 PMS2P11Q13670 270 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 PRR27Q6MZM9 219 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 TGIF2LXQ8IUE1 241 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 PNKDQ8N490 385 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 PRNDQ9UKY0 176 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 CGB1A6NKQ9 187 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 RAB31Q13636 194 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 TNXAQ16473 311 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 TEX36Q5VZQ5 186 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 C1orf174Q8IYL3 243 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 HILPDAQ9Y5L2 63 aa13.67□□□□□ -0.22
USP28-208ENST00000540438 F2Z2F3 143 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 ERVFC1-1P60608 527 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 OR52E5Q8NH55 327 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 SRD5A3Q9H8P0 318 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 TRAPPC1Q9Y5R8 145 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 FAM208BQ5VWN6 2430 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 ACACBO00763 2458 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 AMBPP02760 352 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 KIR2DS2P43631 304 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 NUBP1P53384 320 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 RAB4BP61018 213 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 GNG5P63218 68 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 PAX5Q02548 391 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 NUP37Q8NFH4 326 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 OR51M1Q9H341 326 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 CTDSP1Q9GZU7 261 aa13.66□□□□□ -0.22
USP28-208ENST00000540438 USP9YO00507 2555 aaPredicted RBP13.66□□□□□ -0.22
USP28-208ENST00000540438 GGTLC3B5MD39 225 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 FCN1O00602 326 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 NBL1P41271 181 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 SSTP61278 116 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 KCNIP2Q9NS61 270 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 SLC45A2Q9UMX9 530 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 PDE6DO43924 150 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 IER3P46695 156 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 ARF6P62330 175 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 CENPWQ5EE01 88 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 ONECUT1Q9UBC0 465 aa13.65□□□□□ -0.22
USP28-208ENST00000540438 RANP62826 216 aaKnown RBP13.64□□□□□ -0.23
USP28-208ENST00000540438 PRR20EP86478 221 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 PRR20CP86479 221 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 PRR20DP86480 221 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 PRR20BP86481 221 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 PRR20AP86496 221 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 KLRD1Q13241 179 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 OR8I2Q8N0Y5 310 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 OR5AU1Q8NGC0 362 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 FBXL15Q9H469 300 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 TMEM242Q9NWH2 141 aa13.64□□□□□ -0.23
USP28-208ENST00000540438 CSPG4Q6UVK1 2322 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms