RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 PINX1Q96BK5 328 aaKnown RBP11.38□□□□□ -0.59
UBE3B-212ENST00000540230 ZNF436Q9C0F3 470 aaPredicted RBP11.38□□□□□ -0.59
UBE3B-212ENST00000540230 CACNG5Q9UF02 275 aa11.38□□□□□ -0.59
UBE3B-212ENST00000540230 MLXQ9UH92 298 aa11.38□□□□□ -0.59
UBE3B-212ENST00000540230 INS-IGF2F8WCM5 200 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 NXPH3O95157 252 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 FRMD6-AS1P0C7T7 363 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 RNASE2P10153 161 aaKnown RBP11.37□□□□□ -0.59
UBE3B-212ENST00000540230 HOXA1P49639 335 aaPredicted RBP11.37□□□□□ -0.59
UBE3B-212ENST00000540230 AARDQ4LEZ3 155 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 Q56UQ5 140 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 ZNF57Q68EA5 555 aaPredicted RBP11.37□□□□□ -0.59
UBE3B-212ENST00000540230 TMED4Q7Z7H5 227 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 FAM219AQ8IW50 185 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 BSCL2Q96G97 398 aaPredicted RBP11.37□□□□□ -0.59
UBE3B-212ENST00000540230 SCGB3A2Q96PL1 93 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 PDCD10Q9BUL8 212 aa11.37□□□□□ -0.59
UBE3B-212ENST00000540230 IGHV3OR16-8A0A075B7F1 116 aa11.36□□□□□ -0.59
UBE3B-212ENST00000540230 ZNF785A8K8V0 405 aa11.36□□□□□ -0.59
UBE3B-212ENST00000540230 IGHV4-30-4P0DP06 118 aa11.36□□□□□ -0.59
UBE3B-212ENST00000540230 LYZL2Q7Z4W2 148 aa11.36□□□□□ -0.59
UBE3B-212ENST00000540230 SBSPONQ8IVN8 264 aa11.36□□□□□ -0.59
UBE3B-212ENST00000540230 UXS1Q8NBZ7 420 aa11.36□□□□□ -0.59
UBE3B-212ENST00000540230 TMEM190Q8WZ59 177 aa11.36□□□□□ -0.59
UBE3B-212ENST00000540230 WDR89Q96FK6 387 aaPredicted RBP11.36□□□□□ -0.59
UBE3B-212ENST00000540230 KCNIP3Q9Y2W7 256 aa11.36□□□□□ -0.59
UBE3B-212ENST00000540230 CTSGP08311 255 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 CCR6P51684 374 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 PVRIGQ6DKI7 326 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 SPSB3Q6PJ21 355 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 BTNL8Q6UX41 500 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 OR2K2Q8NGT1 345 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 IL22RA2Q969J5 263 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.35□□□□□ -0.59
UBE3B-212ENST00000540230 NDUFA13Q9P0J0 144 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 CD7P09564 240 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 SNCAP37840 140 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 SPCS3P61009 180 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 BSXQ3C1V8 233 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 NMSQ5H8A3 153 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 TMEM61Q8N0U2 210 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 OR52E5Q8NH55 327 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 ATP6V0BQ99437 205 aa11.35□□□□□ -0.59
UBE3B-212ENST00000540230 FNDC4Q9H6D8 234 aaPredicted RBP11.35□□□□□ -0.59
UBE3B-212ENST00000540230 MRPL36Q9P0J6 103 aaKnown RBP11.35□□□□□ -0.59
UBE3B-212ENST00000540230 A0A0B4J2A0 478 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 LINC00854A0A1B0GVQ3 168 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 ZNF207O43670 478 aaKnown RBP11.34□□□□□ -0.59
UBE3B-212ENST00000540230 C8orf88P0DMB2 117 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 FCGR2BP31994 310 aaPredicted RBP11.34□□□□□ -0.59
UBE3B-212ENST00000540230 MFAP4P55083 255 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 MLANAQ16655 118 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 ANKRD55Q3KP44 614 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 TRIQKQ629K1 86 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 DEDD2Q8WXF8 326 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 WFDC10AQ9H1F0 79 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 C19orf73Q9NVV2 129 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 TECRQ9NZ01 308 aaKnown RBP11.34□□□□□ -0.59
UBE3B-212ENST00000540230 SHPKQ9UHJ6 478 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 UFC1Q9Y3C8 167 aa11.34□□□□□ -0.59
UBE3B-212ENST00000540230 NDUFA4O00483 81 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 SULT1A3P0DMM9 295 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 SULT1A4P0DMN0 295 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 BTCP35070 178 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 PPP1R1AQ13522 171 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 GUCA2BQ16661 112 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 TMEM128Q5BJH2 165 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 TMEM170AQ8WVE7 144 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 SLC25A21Q9BQT8 299 aaPredicted RBP11.33□□□□□ -0.6
UBE3B-212ENST00000540230 C20orf24Q9BUV8 137 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 PALMDQ9NP74 551 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 ENY2Q9NPA8 101 aa11.33□□□□□ -0.6
UBE3B-212ENST00000540230 SCAF4O95104 1147 aaKnown RBP11.32□□□□□ -0.6
UBE3B-212ENST00000540230 NHLRC4P0CG21 123 aaPredicted RBP11.32□□□□□ -0.6
UBE3B-212ENST00000540230 IL7P13232 177 aa11.32□□□□□ -0.6
UBE3B-212ENST00000540230 VAMP1P23763 118 aa11.32□□□□□ -0.6
UBE3B-212ENST00000540230 ELLP55199 621 aaPredicted RBP11.32□□□□□ -0.6
UBE3B-212ENST00000540230 CD81P60033 236 aa11.32□□□□□ -0.6
UBE3B-212ENST00000540230 GTSCR1Q86UQ5 136 aa11.32□□□□□ -0.6
UBE3B-212ENST00000540230 LGI3Q8N145 548 aa11.32□□□□□ -0.6
UBE3B-212ENST00000540230 MRPL27Q9P0M9 148 aaKnown RBP11.32□□□□□ -0.6
UBE3B-212ENST00000540230 DNAH7Q8WXX0 4024 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 CEBPZOSA8MTT3 80 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 A8MZ25 164 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 NUPL2O15504 423 aaKnown RBP11.31□□□□□ -0.6
UBE3B-212ENST00000540230 GNG7O60262 68 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 ANXA3P12429 323 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 INPP1P49441 399 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 RBMS2Q15434 407 aaKnown RBP11.31□□□□□ -0.6
UBE3B-212ENST00000540230 CENPSQ8N2Z9 138 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 MARC2Q969Z3 335 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 TXN2Q99757 166 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 NEURL2Q9BR09 285 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 HEYLQ9NQ87 328 aaPredicted RBP11.31□□□□□ -0.6
UBE3B-212ENST00000540230 DAZ1Q9NQZ3 744 aaKnown RBP11.31□□□□□ -0.6
UBE3B-212ENST00000540230 FLVCR2Q9UPI3 526 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 TENM3Q9P273 2699 aa11.31□□□□□ -0.6
UBE3B-212ENST00000540230 SFT2D2O95562 160 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 OPRK1P41145 380 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 SUB1P53999 127 aaKnown RBP eCLIP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms