RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 MRGPRFQ96AM1 343 aa11.36□□□□□ -0.59
UBE3B-211ENST00000539843 RNF183Q96D59 192 aa11.36□□□□□ -0.59
UBE3B-211ENST00000539843 SEC22AQ96IW7 307 aa11.36□□□□□ -0.59
UBE3B-211ENST00000539843 LYSTQ99698 3801 aa11.36□□□□□ -0.59
UBE3B-211ENST00000539843 CHEK1O14757 476 aa11.35□□□□□ -0.59
UBE3B-211ENST00000539843 TFPI2P48307 235 aa11.35□□□□□ -0.59
UBE3B-211ENST00000539843 CCDC71LQ8N9Z2 235 aa11.35□□□□□ -0.59
UBE3B-211ENST00000539843 LINC00476Q8WZB0 136 aa11.35□□□□□ -0.59
UBE3B-211ENST00000539843 RNF2Q99496 336 aa11.35□□□□□ -0.59
UBE3B-211ENST00000539843 NXF2Q9GZY0 626 aaKnown RBP11.35□□□□□ -0.59
UBE3B-211ENST00000539843 MAP6D1Q9H9H5 199 aa11.35□□□□□ -0.59
UBE3B-211ENST00000539843 DNAH1Q9P2D7 4330 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 IGKV3-7A0A075B6H7 116 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 MPTX1A8MV57 137 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 F8W735 103 aaPredicted RBP11.34□□□□□ -0.59
UBE3B-211ENST00000539843 I3L2K1 104 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 DNASE2O00115 360 aaPredicted RBP11.34□□□□□ -0.59
UBE3B-211ENST00000539843 IFNA17P01571 189 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 TBPP20226 339 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 NCS1P62166 190 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 TRIM16LQ309B1 348 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 CEMP1Q6PRD7 247 aaPredicted RBP11.34□□□□□ -0.59
UBE3B-211ENST00000539843 ARRDC1Q8N5I2 433 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 GATAD1Q8WUU5 269 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 NARS2Q96I59 477 aaKnown RBP11.34□□□□□ -0.59
UBE3B-211ENST00000539843 OR10C1Q96KK4 312 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 CSTL1Q9H114 145 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 COPZ2Q9P299 210 aa11.34□□□□□ -0.59
UBE3B-211ENST00000539843 DBX1A6NMT0 343 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 ST8SIA3O43173 380 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 HPGDSO60760 199 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 HOXA1P49639 335 aaPredicted RBP11.33□□□□□ -0.6
UBE3B-211ENST00000539843 PIGPP57054 158 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 RND3P61587 244 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 VBP1P61758 197 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 RPL11P62913 178 aaKnown RBP11.33□□□□□ -0.6
UBE3B-211ENST00000539843 ZFAND1Q8TCF1 268 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 RRNAD1Q96FB5 475 aaKnown RBP11.33□□□□□ -0.6
UBE3B-211ENST00000539843 FUNDC2Q9BWH2 189 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 MFFQ9GZY8 342 aa11.33□□□□□ -0.6
UBE3B-211ENST00000539843 IGHV3-49A0A0A0MS15 119 aa11.32□□□□□ -0.6
UBE3B-211ENST00000539843 A0A1W2PS18 150 aa11.32□□□□□ -0.6
UBE3B-211ENST00000539843 M0QYG6 137 aa11.32□□□□□ -0.6
UBE3B-211ENST00000539843 B3GALNT1O75752 331 aa11.32□□□□□ -0.6
UBE3B-211ENST00000539843 ELK1P19419 428 aa11.32□□□□□ -0.6
UBE3B-211ENST00000539843 ZNF600Q6ZNG1 722 aa11.32□□□□□ -0.6
UBE3B-211ENST00000539843 TCF24Q7RTU0 167 aa11.32□□□□□ -0.6
UBE3B-211ENST00000539843 APRG1Q8IVJ8 170 aa11.32□□□□□ -0.6
UBE3B-211ENST00000539843 DFFBO76075 338 aa11.31□□□□□ -0.6
UBE3B-211ENST00000539843 RNASE12Q5GAN4 147 aaKnown RBP11.31□□□□□ -0.6
UBE3B-211ENST00000539843 GBGT1Q8N5D6 347 aa11.31□□□□□ -0.6
UBE3B-211ENST00000539843 RARRES2Q99969 163 aa11.31□□□□□ -0.6
UBE3B-211ENST00000539843 IGHV3OR16-13A0A075B7E8 117 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 IGHV3-74A0A0B4J1X5 117 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 C3orf85A0A1B0GTC6 90 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 IGKV1-39P01597 117 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 IGHV3-48P01763 117 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 IGKV1D-39P04432 117 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 IFNA4P05014 189 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 OPRK1P41145 380 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 EIF2B2P49770 351 aaKnown RBP11.3□□□□□ -0.6
UBE3B-211ENST00000539843 PPP5CP53041 499 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 SCGB2B2Q4G0G5 96 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 SPINK9Q5DT21 86 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 TOMM20LQ6UXN7 152 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 CENPSQ8N2Z9 138 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 METTL26Q96S19 204 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 EXTL2Q9UBQ6 330 aa11.3□□□□□ -0.6
UBE3B-211ENST00000539843 PUS1Q9Y606 427 aaKnown RBP eCLIP11.3□□□□□ -0.6
UBE3B-211ENST00000539843 TRAV2A0A0B4J234 112 aa11.29□□□□□ -0.6
UBE3B-211ENST00000539843 RPS10-NUDT3A0A1W2PQS6 291 aa11.29□□□□□ -0.6
UBE3B-211ENST00000539843 INS-IGF2F8WCM5 200 aa11.29□□□□□ -0.6
UBE3B-211ENST00000539843 CA1P00915 261 aaPredicted RBP11.29□□□□□ -0.6
UBE3B-211ENST00000539843 ZNF182P17025 639 aaPredicted RBP11.29□□□□□ -0.6
UBE3B-211ENST00000539843 NPPCP23582 126 aa11.29□□□□□ -0.6
UBE3B-211ENST00000539843 TAS2R19P59542 299 aa11.29□□□□□ -0.6
UBE3B-211ENST00000539843 GRAMD2BQ96HH9 432 aa11.29□□□□□ -0.6
UBE3B-211ENST00000539843 RABAC1Q9UI14 185 aa11.29□□□□□ -0.6
UBE3B-211ENST00000539843 C14orf166Q9Y224 244 aaKnown RBP11.29□□□□□ -0.6
UBE3B-211ENST00000539843 TRAV30A0A087WSZ9 112 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 CD3DP04234 171 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 PI3P19957 117 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 TMEM187Q14656 261 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 LHFPL1Q86WI0 220 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 FAM219AQ8IW50 185 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 STHQ8IWL8 128 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 C11orf45Q8TAV5 145 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 PHLDA1Q8WV24 401 aaPredicted RBP11.28□□□□□ -0.6
UBE3B-211ENST00000539843 ST8SIA2Q92186 375 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 TMEM230Q96A57 120 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 MS4A6AQ9H2W1 248 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 VSIRQ9H7M9 311 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 KLK11Q9UBX7 282 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 MTFP1Q9UDX5 166 aa11.28□□□□□ -0.6
UBE3B-211ENST00000539843 RAB3DO95716 219 aa11.27□□□□□ -0.61
UBE3B-211ENST00000539843 IGKV1-5P01602 117 aa11.27□□□□□ -0.61
UBE3B-211ENST00000539843 MRPS10P82664 201 aaKnown RBP11.27□□□□□ -0.61
UBE3B-211ENST00000539843 MEF2DQ14814 521 aa11.27□□□□□ -0.61
UBE3B-211ENST00000539843 RBMS2Q15434 407 aaKnown RBP11.27□□□□□ -0.61
UBE3B-211ENST00000539843 TMEM41BQ5BJD5 291 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms