RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-233	ENST00000535896	PLEKHA3	Q9HB20	300 aa		5.19	□□□□□ -1.58
SYNE1-233	ENST00000535896	PATZ1	Q9HBE1	687 aa	Known RBP	5.19	□□□□□ -1.58
SYNE1-233	ENST00000535896	BET1L	Q9NYM9	111 aa		5.19	□□□□□ -1.58
SYNE1-233	ENST00000535896	CALY	Q9NYX4	217 aa		5.19	□□□□□ -1.58
SYNE1-233	ENST00000535896	PLA2G3	Q9NZ20	509 aa		5.19	□□□□□ -1.58
SYNE1-233	ENST00000535896	YTHDF2	Q9Y5A9	579 aa	Known RBP	5.19	□□□□□ -1.58
SYNE1-233	ENST00000535896	SVIL	O95425	2214 aa		5.19	□□□□□ -1.58
SYNE1-233	ENST00000535896	IGKV1D-17	A0A075B6S4	117 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	KBTBD11-OT1	A0A1B0GTJ5	212 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	SMIM27	A0A1W2PRY6	76 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	HELT	A6NFD8	242 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	AHRR	A9YTQ3	701 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	SNURFL	B1AK76	121 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896		K7EN84	100 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	FCN1	O00602	326 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	SERF1A	O75920	110 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	LYZL6	O75951	148 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	LHB	P01229	141 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	AMY1A	P04745	511 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	SNRPC	P09234	159 aa	Known RBP	5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	GCSAML	Q5JQS6	135 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF826P	Q6ZT77	177 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	ATP5L2	Q7Z4Y8	100 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	BAGE3	Q86Y29	109 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	BAGE2	Q86Y30	109 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	TMEM256	Q8N2U0	113 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	KLHDC1	Q8N7A1	406 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	SIGLECL1	Q8N7X8	197 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR1L6	Q8NGR2	347 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR4A5	Q8NH83	315 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	OSR1	Q8TAX0	266 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	TMEM68	Q96MH6	324 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	RBM14	Q96PK6	669 aa	Known RBP	5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	SAMD10	Q9BYL1	202 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	CBLN4	Q9NTU7	201 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	IDI2-AS1	Q9NZ38	188 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	DUSP13	Q9UII6	198 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	CDC42EP3	Q9UKI2	254 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	TP53TG3	Q9ULZ0	132 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	SPEN	Q96T58	3664 aa	Known RBP	5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	POLE	Q07864	2286 aa		5.18	□□□□□ -1.58
SYNE1-233	ENST00000535896	CACNA1D	Q01668	2161 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	IGLV3-9	A0A075B6K5	115 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	IGHV3-43	A0A0B4J1X8	118 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	IGHV1-18	A0A0C4DH31	117 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896		A0A1W2PN81	502 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF705F	A8MVS1	300 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF253	O75346	499 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	GPX1	P07203	203 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	LINC00869	P0C866	280 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF705D	P0CH99	300 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF705B	P0CI00	300 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	SAA2	P0DJI9	122 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	C8orf88	P0DMB2	117 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	IGHV3-43D	P0DP04	118 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	CBLN1	P23435	193 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	GLRX	P35754	106 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	KIR2DL2	P43627	348 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	PPOX	P50336	477 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	LINC00310	P59036	64 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	PMCHL1	Q16048	86 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	HLA-DRB5	Q30154	266 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	TMEM95	Q3KNT9	176 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	CENPW	Q5EE01	88 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	TIMM23B	Q5SRD1	257 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896		Q6ZWC4	215 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	SSX8	Q7RTT4	187 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	LRP11	Q86VZ4	500 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	C8orf31	Q8N9H6	132 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896		Q8NA96	180 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF439	Q8NDP4	499 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	STXBP6	Q8NFX7	210 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR4P4	Q8NGL7	312 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR1L4	Q8NGR5	311 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	VSTM2A	Q8TAG5	236 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	C1orf159	Q96HA4	380 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	IGF2BP2-AS1	Q96M15	143 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	NABP2	Q9BQ15	211 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	DEFB127	Q9H1M4	99 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	MSL2	Q9HCI7	577 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	SEPSECS	Q9HD40	501 aa	Known RBP	5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	UQCR10	Q9UDW1	63 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	PROCR	Q9UNN8	238 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	OR51B2	Q9Y5P1	312 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	SOX21	Q9Y651	276 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	DYSF	O75923	2080 aa		5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	HELZ2	Q9BYK8	2649 aa	Known RBP	5.17	□□□□□ -1.58
SYNE1-233	ENST00000535896	IZUMO1R	A6ND01	250 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	MBD3L4	A6NDZ8	208 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	MBD3L3	A6NE82	208 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	MBD3L5	A6NJ08	208 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896		J3QR06	171 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	UPK2	O00526	184 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNHIT1	O43257	154 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	DLEU1	O43261	78 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	ZNF324	O75467	553 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CA2	P00918	260 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	DEFA4	P12838	97 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	EGR1	P18146	543 aa		5.16	□□□□□ -1.58
SYNE1-233	ENST00000535896	CTRL	P40313	264 aa		5.16	□□□□□ -1.58

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