RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 FAM173BQ6P4H8 233 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 FP248Q71RG6 208 aaPredicted RBP0.99□□□□□ -2.25
CD44-238ENST00000534296 DHFR2Q86XF0 187 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 KRT222Q8N1A0 295 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 C1orf158Q8N1D5 194 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 DYNAPQ8N1N2 210 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 OR8J2Q8NGG1 315 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 OR2T4Q8NH00 348 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 MRPL30Q8TCC3 161 aaKnown RBP0.99□□□□□ -2.25
CD44-238ENST00000534296 SLC35B4Q969S0 331 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 Q96M85 177 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 HSPB9Q9BQS6 159 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 SLC39A9Q9NUM3 307 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 MED9Q9NWA0 146 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 SPG11Q96JI7 2443 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 PLXND1Q9Y4D7 1925 aa0.99□□□□□ -2.25
CD44-238ENST00000534296 MAP1BP46821 2468 aaKnown RBP0.98□□□□□ -2.25
CD44-238ENST00000534296 SZT2Q5T011 3432 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 TRAV9-1A0A075B6T8 112 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 IGKV2D-26A0A0A0MRZ7 120 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.98□□□□□ -2.25
CD44-238ENST00000534296 TRAPPC13A5PLN9 417 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 PIRO00625 290 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 CIAO1O76071 339 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 HLA-DRB1P01911 266 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 ZNF705BP0CI00 300 aaPredicted RBP0.98□□□□□ -2.25
CD44-238ENST00000534296 RUNX1Q01196 453 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 MOGQ16653 247 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 GUK1Q16774 197 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 IMPG1Q17R60 797 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 SPANXN5Q5MJ07 72 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 ALKAL1Q6UXT8 129 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 TRAPPC6BQ86SZ2 158 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 TMEM86BQ8N661 226 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 C12orf29Q8N999 325 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 ZNF439Q8NDP4 499 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 OR4E2Q8NGC2 313 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 C10orf105Q8TEF2 133 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 RASSF5Q8WWW0 418 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 CYSTM1Q9H1C7 97 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 BAIAP2Q9UQB8 552 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 CCDC88AQ3V6T2 1871 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 CFAP47Q6ZTR5 3102 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 ZNF106Q9H2Y7 1883 aaKnown RBP0.98□□□□□ -2.25
CD44-238ENST00000534296 ZFHX4Q86UP3 3567 aa0.98□□□□□ -2.25
CD44-238ENST00000534296 USP9YO00507 2555 aaPredicted RBP0.98□□□□□ -2.25
CD44-238ENST00000534296 FREM1Q5H8C1 2179 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 KDM6BO15054 1643 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 TGIF2-C20orf24A0A0A6YYL0 155 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 IGKV1D-43A0A0B4J1Z2 117 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 PQLC2LA1A4F0 135 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 INMT-MINDY4F8WBC2 141 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 TCL1BO95988 128 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 SHBGP04278 402 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 MYL6P60660 151 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 SURF2Q15527 256 aaPredicted RBP0.97□□□□□ -2.25
CD44-238ENST00000534296 KHDC3LQ587J8 217 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 OOSP2Q86WS3 158 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 PHF13Q86YI8 300 aaPredicted RBP0.97□□□□□ -2.25
CD44-238ENST00000534296 OR4D11Q8NGI4 311 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 OR13C4Q8NGS5 318 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 BORCS7Q96B45 105 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 MRPL57Q9BQC6 102 aaKnown RBP0.97□□□□□ -2.25
CD44-238ENST00000534296 ADAT1Q9BUB4 502 aaKnown RBP0.97□□□□□ -2.25
CD44-238ENST00000534296 DERL1Q9BUN8 251 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 TRIM4Q9C037 500 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 OR8D2Q9GZM6 311 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 UCK1Q9HA47 277 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 FBXL12Q9NXK8 326 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 UBAP1Q9NZ09 502 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 CFAP46Q8IYW2 2715 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 EYSQ5T1H1 3165 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 MYH7BA7E2Y1 1941 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 ATRQ13535 2644 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 PDZD2O15018 2839 aa0.97□□□□□ -2.25
CD44-238ENST00000534296 TTC28Q96AY4 2481 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 TTC21AQ8NDW8 1320 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 HIVEP3Q5T1R4 2406 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 FAM208BQ5VWN6 2430 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 DPRXA6NFQ7 191 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 E2F6O75461 281 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 SERPINA6P08185 405 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 RPS17P08708 135 aaKnown RBP0.96□□□□□ -2.26
CD44-238ENST00000534296 HTR1AP08908 422 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 G6PCP35575 357 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 SNRPD2P62316 118 aaKnown RBP0.96□□□□□ -2.26
CD44-238ENST00000534296 SUPT4H1P63272 117 aaKnown RBP0.96□□□□□ -2.26
CD44-238ENST00000534296 OR2F1Q13607 317 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 ZNF345Q14585 488 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 KCNJ8Q15842 424 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 Q1T7F1 81 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 Q6ZRN7 208 aaPredicted RBP0.96□□□□□ -2.26
CD44-238ENST00000534296 MIR17HGQ75NE6 70 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 CLVS1Q8IUQ0 354 aaPredicted RBP0.96□□□□□ -2.26
CD44-238ENST00000534296 SPACA4Q8TDM5 124 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 BTF3L4Q96K17 158 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 TRABDQ9H4I3 376 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 CISHQ9NSE2 258 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 TMEM56-RWDD3S4R434 201 aa0.96□□□□□ -2.26
CD44-238ENST00000534296 V9GYY5 206 aaPredicted RBP0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms