RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 AP4M1O00189 453 aa11.23□□□□□ -0.61
TRIM3-212ENST00000533064 DFFBO76075 338 aa11.23□□□□□ -0.61
TRIM3-212ENST00000533064 METTL15P1P0C7V9 234 aa11.23□□□□□ -0.61
TRIM3-212ENST00000533064 VDAC2P45880 294 aaPredicted RBP11.23□□□□□ -0.61
TRIM3-212ENST00000533064 SUB1P53999 127 aaKnown RBP eCLIP11.23□□□□□ -0.61
TRIM3-212ENST00000533064 LFNGQ8NES3 379 aa11.23□□□□□ -0.61
TRIM3-212ENST00000533064 ATP5SQ99766 215 aa11.23□□□□□ -0.61
TRIM3-212ENST00000533064 A0A1B0GW64 132 aa11.22□□□□□ -0.61
TRIM3-212ENST00000533064 IGLC7A0M8Q6 106 aa11.22□□□□□ -0.61
TRIM3-212ENST00000533064 SCAF4O95104 1147 aaKnown RBP11.22□□□□□ -0.61
TRIM3-212ENST00000533064 WT1-ASQ06250 92 aa11.22□□□□□ -0.61
TRIM3-212ENST00000533064 ECSCRQ19T08 205 aa11.22□□□□□ -0.61
TRIM3-212ENST00000533064 UNQ5815/PRO19632Q6UWF5 114 aa11.22□□□□□ -0.61
TRIM3-212ENST00000533064 SLC24A4Q8NFF2 622 aa11.22□□□□□ -0.61
TRIM3-212ENST00000533064 OR4C12Q96R67 309 aa11.22□□□□□ -0.61
TRIM3-212ENST00000533064 REG1AP05451 166 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 SEC11BP0C7V7 166 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 DEFA4P12838 97 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 NPY1RP25929 384 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 ATP5IP56385 69 aaPredicted RBP11.21□□□□□ -0.61
TRIM3-212ENST00000533064 RAB11AP62491 216 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 AKIRIN2Q53H80 203 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 HAPLN4Q86UW8 402 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 RNF141Q8WVD5 230 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 MED9Q9NWA0 146 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 FBXO7Q9Y3I1 522 aa11.21□□□□□ -0.61
TRIM3-212ENST00000533064 LINC01548A6NM66 108 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 CYB5BO43169 146 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 FBXO24O75426 580 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 IGF1P05019 195 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 OR8U8P0C7N1 319 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 SPP1P10451 314 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 EGR2P11161 476 aaPredicted RBP11.2□□□□□ -0.62
TRIM3-212ENST00000533064 AREGP15514 252 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 ARL16Q0P5N6 197 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 JMJD1CQ15652 2540 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 TRAV41A0A0B4J266 112 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 NPIPB5A8MRT5 1133 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 IFNA5P01569 189 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 CRIP2P52943 208 aaPredicted RBP11.2□□□□□ -0.62
TRIM3-212ENST00000533064 SLC38A11Q08AI6 406 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 Q6ZS46 218 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 LILRB2Q8N423 598 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 TTC9CQ8N5M4 171 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 HSD17B11Q8NBQ5 300 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 OR1L6Q8NGR2 347 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 OR2T6Q8NHC8 308 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 ZNF702PQ9H963 129 aa11.2□□□□□ -0.62
TRIM3-212ENST00000533064 C15orf62A8K5M9 175 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 PMS2P5A8MQ11 134 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 IFNA4P05014 189 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 CTRB1P17538 263 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 S100A1P23297 94 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 SULT1A2P50226 295 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 ATP6V1FQ16864 119 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 C2orf83Q53S99 150 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 CTRB2Q6GPI1 263 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 ZNF114Q8NC26 417 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 OR5T1Q8NG75 326 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 OR10P1Q8NGE3 313 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 OR1P1Q8NH06 330 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 FAM110DQ8TAY7 271 aaPredicted RBP11.19□□□□□ -0.62
TRIM3-212ENST00000533064 PINX1Q96BK5 328 aaKnown RBP11.19□□□□□ -0.62
TRIM3-212ENST00000533064 GNPNAT1Q96EK6 184 aaPredicted RBP11.19□□□□□ -0.62
TRIM3-212ENST00000533064 CXorf58Q96LI9 332 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 P2RX4Q99571 388 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 LINC00527Q9UJ94 153 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 ZNF580Q9UK33 172 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 F11RQ9Y624 299 aaKnown RBP11.19□□□□□ -0.62
TRIM3-212ENST00000533064 C2CD3Q4AC94 2353 aa11.19□□□□□ -0.62
TRIM3-212ENST00000533064 SETD2Q9BYW2 2564 aaPredicted RBP11.18□□□□□ -0.62
TRIM3-212ENST00000533064 G3V318 75 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 RNASE2P10153 161 aaKnown RBP11.18□□□□□ -0.62
TRIM3-212ENST00000533064 ATP6V0CP27449 155 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 BSXQ3C1V8 233 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 ASPHD1Q5U4P2 390 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 OR8G2PQ6IF36 304 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 COMMD7Q86VX2 200 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 Q8N2B8 174 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 SAT2Q96F10 170 aaPredicted RBP11.18□□□□□ -0.62
TRIM3-212ENST00000533064 NOL4LQ96MY1 436 aaPredicted RBP11.18□□□□□ -0.62
TRIM3-212ENST00000533064 PARD6GQ9BYG4 376 aaPredicted RBP11.18□□□□□ -0.62
TRIM3-212ENST00000533064 WNT10AQ9GZT5 417 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 PFDN2Q9UHV9 154 aa11.18□□□□□ -0.62
TRIM3-212ENST00000533064 CORTO00230 105 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 TSPAN9O75954 239 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 CRYGCP07315 174 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 TMEM95Q3KNT9 176 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 SLC25A24Q6NUK1 477 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 ETV3LQ6ZN32 361 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 Q6ZSV7 163 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 ZNF355PQ9NSJ1 428 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 ZNF705EA8MWA4 302 aaPredicted RBP11.17□□□□□ -0.62
TRIM3-212ENST00000533064 RAB5CP51148 216 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 SLC35B1P78383 322 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 SCGB1C1Q8TD33 95 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 RNASEH2CQ8TDP1 164 aaKnown RBP11.17□□□□□ -0.62
TRIM3-212ENST00000533064 TMEM147Q9BVK8 224 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 SH3BGRL3Q9H299 93 aa11.17□□□□□ -0.62
TRIM3-212ENST00000533064 PLA2G2EQ9NZK7 142 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms