RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PACRGQ96M98 296 aaPredicted RBP4.77□□□□□ -1.65
LSM1-202ENST00000520286 LYSMD1Q96S90 227 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 HIST1H2BLQ99880 126 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 EFCAB11Q9BUY7 163 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 CCL26Q9Y258 94 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 ZNF257Q9Y2Q1 563 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 NOP16Q9Y3C1 178 aaKnown RBP4.77□□□□□ -1.65
LSM1-202ENST00000520286 HECTD1Q9ULT8 2610 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 TENM4Q6N022 2769 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 PCNX2A6NKB5 2137 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 URB1O60287 2271 aaKnown RBP4.76□□□□□ -1.65
LSM1-202ENST00000520286 VWA8A3KMH1 1905 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 TICRRQ7Z2Z1 1910 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 MDC1Q14676 2089 aaKnown RBP4.76□□□□□ -1.65
LSM1-202ENST00000520286 F5H5T6 163 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 CST4P01036 141 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 HLA-AP01891 365 aaKnown RBP4.76□□□□□ -1.65
LSM1-202ENST00000520286 G0S2P27469 103 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 IMPA1P29218 277 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 PRSS3P35030 304 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 CLDN12P56749 244 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 FAM3AP98173 230 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 PPP1R1AQ13522 171 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 PDGFRLQ15198 375 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 ELOBQ15370 118 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 ZNHIT3Q15649 155 aaPredicted RBP4.76□□□□□ -1.65
LSM1-202ENST00000520286 USF2Q15853 346 aaPredicted RBP4.76□□□□□ -1.65
LSM1-202ENST00000520286 GUK1Q16774 197 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 TMPPEQ6ZT21 453 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 DEFB119Q8N690 84 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 OR52L1Q8NGH7 329 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 OR2L8Q8NGY9 312 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 MAFIPQ8WZ33 124 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 OTUB2Q96DC9 234 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 PHB2Q99623 299 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 PRSS27Q9BQR3 290 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 SPACA1Q9HBV2 294 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 SLC23A2Q9UGH3 650 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 WDFY3Q8IZQ1 3526 aa4.76□□□□□ -1.65
LSM1-202ENST00000520286 FREM2Q5SZK8 3169 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 A0A0A6YYH2 397 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 A6NJ64 397 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 CPSF4LA6NMK7 179 aaKnown RBP4.75□□□□□ -1.65
LSM1-202ENST00000520286 RIIAD1A6NNX1 92 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 CEACAM18A8MTB9 384 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 UMAD1C9J7I0 102 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 M0R036 132 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 RRP8O43159 456 aaKnown RBP4.75□□□□□ -1.65
LSM1-202ENST00000520286 CBR3O75828 277 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 RCBTB2O95199 551 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 RHOCP08134 193 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 MRPL3P09001 348 aaKnown RBP4.75□□□□□ -1.65
LSM1-202ENST00000520286 CXCL1P09341 107 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 FABP4P15090 132 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 IGFBP3P17936 291 aaPredicted RBP4.75□□□□□ -1.65
LSM1-202ENST00000520286 CXCR1P25024 350 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 TAS2R31P59538 309 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 Q499Y3 187 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 SCGB2B2Q4G0G5 96 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 OPN5Q6U736 354 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 TMED4Q7Z7H5 227 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 ZNF283Q8N7M2 679 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 LFNGQ8NES3 379 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 OR8G5Q8NG78 346 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 OR6N2Q8NGY6 317 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 OR51A7Q8NH64 312 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 Q8WTZ3 238 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 TMEM234Q8WY98 164 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 GABRG3Q99928 467 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 PRRT1Q99946 306 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 PDCD1LG2Q9BQ51 273 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 SAMD10Q9BYL1 202 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 RAB1BQ9H0U4 201 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 CST11Q9H112 138 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 SLC35B3Q9H1N7 401 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 OR51B6Q9H340 312 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 OR52A1Q9UKL2 312 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 SIGLEC7Q9Y286 467 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 PPIL1Q9Y3C6 166 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 PCYT1BQ9Y5K3 369 aaPredicted RBP4.75□□□□□ -1.65
LSM1-202ENST00000520286 TSSC4Q9Y5U2 329 aaPredicted RBP4.75□□□□□ -1.65
LSM1-202ENST00000520286 V9GYS6 101 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 CACNA1EQ15878 2313 aa4.75□□□□□ -1.65
LSM1-202ENST00000520286 CFAP46Q8IYW2 2715 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 APC2O95996 2303 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 USP9XQ93008 2570 aaPredicted RBP4.74□□□□□ -1.65
LSM1-202ENST00000520286 IGLV4-69A0A075B6H9 119 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 TLCD2A6NGC4 264 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 K7EP13 123 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 ALOX12BO75342 701 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 GUSBP08236 651 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 OR4Q2P0C623 313 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 SEC11BP0C7V7 166 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 TRGC1P0CF51 173 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 CCL2P13500 99 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 HMGA1P17096 107 aaKnown RBP4.74□□□□□ -1.65
LSM1-202ENST00000520286 TEAD1P28347 426 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 ELOCQ15369 112 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 OR1Q1Q15612 314 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 C1orf194Q5T5A4 169 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms