RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CMTM2Q8TAZ6 248 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 OR5B12Q96R08 314 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 SLC35B3Q9H1N7 401 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 TMEM231Q9H6L2 316 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 F11RQ9Y624 299 aaKnown RBP6.75□□□□□ -1.33
USP54-215ENST00000497106 WDR87Q6ZQQ6 2873 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 RNF223E7ERA6 249 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 PAX9P55771 341 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 RAB5BP61020 215 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 PVRIGQ6DKI7 326 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 Q8N7P7 452 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 TBX15Q96SF7 602 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 CEP295Q9C0D2 2601 aa6.75□□□□□ -1.33
USP54-215ENST00000497106 A0A0G2JLM5 398 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 RNASE2P10153 161 aaKnown RBP6.74□□□□□ -1.33
USP54-215ENST00000497106 CSN1S1P47710 185 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 ATP5G2Q06055 141 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 TIGITQ495A1 244 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 WFDC1Q9HC57 220 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 PDE6DO43924 150 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 HLA-DRB1P01911 266 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 LINC00869P0C866 280 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 G0S2P27469 103 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 HAGHQ16775 308 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 TMEM95Q3KNT9 176 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 EIF4E3Q8N5X7 224 aaKnown RBP6.74□□□□□ -1.33
USP54-215ENST00000497106 WNT10AQ9GZT5 417 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 ICE1Q9Y2F5 2266 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 A0A1W2PPI3 338 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 M0QZ24 198 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 AP4M1O00189 453 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 C1QL1O75973 258 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 IL6RP08887 468 aaPredicted RBP6.74□□□□□ -1.33
USP54-215ENST00000497106 ZFP36P26651 326 aaKnown RBP6.74□□□□□ -1.33
USP54-215ENST00000497106 FAM78BQ5VT40 261 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 ZNF114Q8NC26 417 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 NEU1Q99519 415 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 TXN2Q99757 166 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 PRSS22Q9GZN4 317 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 IGHV3OR16-10A0A075B7F0 116 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 CIDEAO60543 219 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 LYZP61626 148 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 LHFPL4Q7Z7J7 247 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 STPG3Q8N7X2 389 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 OR2T6Q8NHC8 308 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 DNAJC4Q9NNZ3 241 aa6.74□□□□□ -1.33
USP54-215ENST00000497106 TRAV1-1A0A0B4J248 108 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 NPIPB5A8MRT5 1133 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 SEC11CQ9BY50 192 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 SH3BGRL3Q9H299 93 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 ZNRD1Q9P1U0 126 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 HSPB1P04792 205 aaKnown RBP6.73□□□□□ -1.33
USP54-215ENST00000497106 BCL2P10415 239 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 LINC00205P59089 165 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 LY6EQ16553 131 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 MIC13Q5XKP0 118 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 OR1B1Q8NGR6 318 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 RXFP4Q8TDU9 374 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 NPIPB3Q92617 1050 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 C21orf62Q9NYP8 219 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 PLCE1Q9P212 2302 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 PKDREJQ9NTG1 2253 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 TCRBV4S1A1TA0A5B7 111 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 BMPR1BO00238 502 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 RD3LP0DJH9 198 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 PNRC1Q12796 327 aaPredicted RBP6.73□□□□□ -1.33
USP54-215ENST00000497106 ZNF418Q8TF45 676 aaPredicted RBP6.73□□□□□ -1.33
USP54-215ENST00000497106 TRGV9Q99603 122 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 ACACBO00763 2458 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 YIF1AO95070 293 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 SFTA3P0C7M3 94 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 C8orf88P0DMB2 117 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 TREML4Q6UXN2 200 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 REC114Q7Z4M0 266 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 FAM110DQ8TAY7 271 aaPredicted RBP6.73□□□□□ -1.33
USP54-215ENST00000497106 MBD3L1Q8WWY6 194 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 C11orf1Q9H5F2 150 aa6.73□□□□□ -1.33
USP54-215ENST00000497106 VWC2LB2RUY7 222 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 SMAD7O15105 426 aaKnown RBP6.72□□□□□ -1.33
USP54-215ENST00000497106 NDUFA3O95167 84 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 UBE2L3P68036 154 aaKnown RBP6.72□□□□□ -1.33
USP54-215ENST00000497106 YAE1D1Q9NRH1 226 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 FUT9Q9Y231 359 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 ANKRD11Q6UB99 2663 aaPredicted RBP6.72□□□□□ -1.33
USP54-215ENST00000497106 TMEM218A2RU14 115 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 LY6LH3BQJ8 138 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 REG1AP05451 166 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 ORM2P19652 201 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 CX3CL1P78423 397 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 VWC2Q2TAL6 325 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 TVP23CQ96ET8 276 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 CHRDL1Q9BU40 450 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 AAMDCQ9H7C9 122 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 FBXL7Q9UJT9 491 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 PRUNE2Q8WUY3 3088 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 CENPVL3A0A0U1RRI6 287 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 A0A1B0GW64 132 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 FAM223BA6NKX1 122 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 AKR1C3P42330 323 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 CNN1P51911 297 aaKnown RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms