RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 TRAV3A0A0B4J244 114 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 TCRBV5S1A1TA0A578 114 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 K7ESM1 405 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 CTSBP07858 339 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 SCTP09683 121 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 TIRAPP58753 221 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 C12orf73Q69YU5 71 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 C11orf44Q8N8P7 122 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 IFI27L1Q96BM0 104 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 WBP1Q96G27 269 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 MED12Q93074 2177 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 ANKRD31Q8N7Z5 1873 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 LIMS1P48059 325 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 EVX1P49640 407 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 VWC2Q2TAL6 325 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 AGMATQ9BSE5 352 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 COA6Q5JTJ3 125 aaKnown RBP4.94□□□□□ -1.62
USF3-204ENST00000496826 SAXO1Q8IYX7 474 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 VSIG2Q96IQ7 327 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 PNRC2Q9NPJ4 139 aaKnown RBP4.94□□□□□ -1.62
USF3-204ENST00000496826 SCRT2Q9NQ03 307 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 ZNF706Q9Y5V0 76 aaPredicted RBP4.94□□□□□ -1.62
USF3-204ENST00000496826 ADGRB2O60241 1585 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 CACNA1BQ00975 2339 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 QRICH2Q9H0J4 1663 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 CCL22O00626 93 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 WNT1P04628 370 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 MPV17P39210 176 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 CLDN12P56749 244 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 OXLD1Q5BKU9 147 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 MAVSQ7Z434 540 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 LINC00477Q96M19 166 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 PHF7Q9BWX1 381 aaPredicted RBP4.94□□□□□ -1.62
USF3-204ENST00000496826 SMIM27A0A1W2PRY6 76 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 RND3P61587 244 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 UBE2D2P62837 147 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 ZFP36L1Q07352 338 aaKnown RBP4.94□□□□□ -1.62
USF3-204ENST00000496826 ABCA9Q8IUA7 1624 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 PXDNQ92626 1479 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 MED13Q9UHV7 2174 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 CACNA1IQ9P0X4 2223 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 EIF4EBP2Q13542 120 aaPredicted RBP4.94□□□□□ -1.62
USF3-204ENST00000496826 GPHB5Q86YW7 130 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 USMG5Q96IX5 58 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 RCHY1Q96PM5 261 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 SIGLEC12Q96PQ1 595 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 ZMAT3Q9HA38 289 aaKnown RBP4.94□□□□□ -1.62
USF3-204ENST00000496826 WNK2Q9Y3S1 2297 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 G3V4G9 280 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 ZGLP1P0C6A0 271 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 ZNF708P17019 499 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 LIM2P55344 173 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 FAM90A1Q86YD7 464 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 ELSPBP1Q96BH3 223 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 SELENOKQ9Y6D0 94 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 TRBV24-1A0A075B6N3 115 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 PPYP01298 95 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 ZC2HC1BQ5TFG8 222 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 FAM104BQ5XKR9 115 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 ACP7Q6ZNF0 438 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 SH2D5Q6ZV89 423 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 MS4A8Q9BY19 250 aa4.94□□□□□ -1.62
USF3-204ENST00000496826 PPIAL4CA0A0B4J2A2 164 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 F8W1H4 67 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 PPIAL4GP0DN37 164 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 FXYD3Q14802 87 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 OOSP1A8MZH6 123 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 ZNF134P52741 427 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 ZNF329Q86UD4 541 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 PUSL1Q8N0Z8 303 aaKnown RBP4.93□□□□□ -1.62
USF3-204ENST00000496826 IZUMO1RA6ND01 250 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 GAGE12HA6NDE8 117 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 COL10A1Q03692 680 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 RPRMLQ8N4K4 120 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 PAQR4Q8N4S7 273 aaPredicted RBP4.93□□□□□ -1.62
USF3-204ENST00000496826 H3BUT2 72 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 RAMP3O60896 148 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 GATA3P23771 443 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 SLC25A47Q6Q0C1 308 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 HCFC1R1Q9NWW0 138 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 SPTA1P02549 2419 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 TRAV8-3A0A0A6YYJ7 113 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 LDLRAD4O15165 306 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 IGHV3-9P01782 118 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 IGKV5-2P06315 115 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 PSMB8P28062 276 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 ZXDCQ2QGD7 858 aaPredicted RBP4.93□□□□□ -1.62
USF3-204ENST00000496826 NMSQ5H8A3 153 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 ZNF826PQ6ZT77 177 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 LILRA3Q8N6C8 439 aaPredicted RBP4.93□□□□□ -1.62
USF3-204ENST00000496826 DPM3Q9P2X0 92 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 ANKRD26Q9UPS8 1709 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 ADGRB1O14514 1584 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 A0A087WUJ7 227 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 LY96Q9Y6Y9 160 aa4.93□□□□□ -1.62
USF3-204ENST00000496826 MARCH11A6NNE9 402 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 NDUFC2-KCTD14E9PQ53 114 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 B9D1Q9UPM9 204 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 DYSFO75923 2080 aa4.92□□□□□ -1.62
USF3-204ENST00000496826 DEFB108AA8MXU0 73 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms