RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 CSMD3Q7Z407 3707 aa11.8□□□□□ -0.52
HDAC4-213ENST00000496347 IGHV3-21A0A0B4J1V1 117 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 NUPL2O15504 423 aaKnown RBP11.79□□□□□ -0.52
HDAC4-213ENST00000496347 SCAF4O95104 1147 aaKnown RBP11.79□□□□□ -0.52
HDAC4-213ENST00000496347 AKAIN1P0CW23 69 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 ADMP35318 185 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 CASC10Q5T4H9 136 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 FAAP20Q6NZ36 180 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 FAM219AQ8IW50 185 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 OR4C16Q8NGL9 310 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 RRNAD1Q96FB5 475 aaKnown RBP11.79□□□□□ -0.52
HDAC4-213ENST00000496347 SLIRPQ9GZT3 109 aaKnown RBP11.79□□□□□ -0.52
HDAC4-213ENST00000496347 TMEM222Q9H0R3 208 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 RSL24D1Q9UHA3 163 aaKnown RBP11.79□□□□□ -0.52
HDAC4-213ENST00000496347 TENM2Q9NT68 2774 aa11.79□□□□□ -0.52
HDAC4-213ENST00000496347 A0A0B4J293 547 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 RBMY1BA6NDE4 496 aaKnown RBP11.78□□□□□ -0.52
HDAC4-213ENST00000496347 RBMY1EA6NEQ0 496 aaKnown RBP11.78□□□□□ -0.52
HDAC4-213ENST00000496347 K7EMT4 169 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 CORTO00230 105 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 ST8SIA3O43173 380 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 GSTZ1O43708 216 aaPredicted RBP11.78□□□□□ -0.52
HDAC4-213ENST00000496347 CTSGP08311 255 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 RBMY1DP0C7P1 496 aaKnown RBP11.78□□□□□ -0.52
HDAC4-213ENST00000496347 LYL1P12980 280 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 MFAP4P55083 255 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 IZUMO4Q1ZYL8 232 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 RNASE11Q8TAA1 199 aaKnown RBP11.78□□□□□ -0.52
HDAC4-213ENST00000496347 C20orf24Q9BUV8 137 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 HIPK2Q9H2X6 1198 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 NAA60Q9H7X0 242 aa11.78□□□□□ -0.52
HDAC4-213ENST00000496347 DYNC2H1Q8NCM8 4307 aaKnown RBP11.78□□□□□ -0.52
HDAC4-213ENST00000496347 TSPAN4O14817 238 aa11.77□□□□□ -0.53
HDAC4-213ENST00000496347 MT-CO2P00403 227 aa11.77□□□□□ -0.53
HDAC4-213ENST00000496347 IFNA17P01571 189 aa11.77□□□□□ -0.53
HDAC4-213ENST00000496347 OR5AC1P0C628 307 aa11.77□□□□□ -0.53
HDAC4-213ENST00000496347 SNCAP37840 140 aa11.77□□□□□ -0.53
HDAC4-213ENST00000496347 AARDQ4LEZ3 155 aa11.77□□□□□ -0.53
HDAC4-213ENST00000496347 LAMTOR1Q6IAA8 161 aa11.77□□□□□ -0.53
HDAC4-213ENST00000496347 RBPMSQ93062 196 aaKnown RBP11.77□□□□□ -0.53
HDAC4-213ENST00000496347 STARD9Q9P2P6 4700 aa11.77□□□□□ -0.53
HDAC4-213ENST00000496347 ANKRD20A5PA0PJZ0 165 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 CDS2O95674 445 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 HOXA1P49639 335 aaPredicted RBP11.76□□□□□ -0.53
HDAC4-213ENST00000496347 SUB1P53999 127 aaKnown RBP eCLIP11.76□□□□□ -0.53
HDAC4-213ENST00000496347 SP6Q3SY56 376 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 SPINK9Q5DT21 86 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 PVRIGQ6DKI7 326 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 PINX1Q96BK5 328 aaKnown RBP11.76□□□□□ -0.53
HDAC4-213ENST00000496347 OR10C1Q96KK4 312 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 RTBDNQ9BSG5 229 aaPredicted RBP11.76□□□□□ -0.53
HDAC4-213ENST00000496347 GGTLC1Q9BX51 225 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 NXF2Q9GZY0 626 aaKnown RBP11.76□□□□□ -0.53
HDAC4-213ENST00000496347 ENY2Q9NPA8 101 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 SELENOKQ9Y6D0 94 aa11.76□□□□□ -0.53
HDAC4-213ENST00000496347 TEX13DA0A0J9YY54 714 aaPredicted RBP11.75□□□□□ -0.53
HDAC4-213ENST00000496347 CRYM-AS1A6NIL9 109 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 GNG7O60262 68 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 NPBWR1P48145 328 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 DHODHQ02127 395 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 OR51S1Q8NGJ8 323 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 MCFD2Q8NI22 146 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 FAM110AQ9BQ89 295 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 CACFD1Q9UGQ2 172 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 SCP2D1Q9UJQ7 156 aa11.75□□□□□ -0.53
HDAC4-213ENST00000496347 IGHV3OR16-8A0A075B7F1 116 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 A0A0G2JRQ6 117 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 OR4C46A6NHA9 309 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 SCGB2A1O75556 95 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 BMI1P35226 326 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 SPCS3P61009 180 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 DUSP18Q8NEJ0 188 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 OR52E5Q8NH55 327 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 GLYATL2Q8WU03 294 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 ZNF414Q96IQ9 312 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 SCGB3A2Q96PL1 93 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 GINS3Q9BRX5 216 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 RETNQ9HD89 108 aa11.74□□□□□ -0.53
HDAC4-213ENST00000496347 LOC102724200A0A096LPH7 203 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-213ENST00000496347 IGHV7-4-1A0A0J9YVY3 117 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 YIF1AO95070 293 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 RNASE2P10153 161 aaKnown RBP11.73□□□□□ -0.53
HDAC4-213ENST00000496347 BSXQ3C1V8 233 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 LHFPL5Q8TAF8 219 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 IL22RA2Q969J5 263 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 GALNT14Q96FL9 552 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 SOSTQ9BQB4 213 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-213ENST00000496347 SMPXQ9UHP9 88 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 GPR132Q9UNW8 380 aa11.73□□□□□ -0.53
HDAC4-213ENST00000496347 FABP12A6NFH5 140 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 ZNF207O43670 478 aaKnown RBP11.72□□□□□ -0.53
HDAC4-213ENST00000496347 IGHV3-48P01763 117 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 CD5P06127 495 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 TNFSF8P32971 234 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 FAUP35544 74 aaKnown RBP11.72□□□□□ -0.53
HDAC4-213ENST00000496347 ETV6P41212 452 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 TMEM268Q5VZI3 342 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 TMEM116Q8NCL8 245 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 MCUBQ9NWR8 336 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms