RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	RPP30	P78346	268 aa	Known RBP	11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	EXOSC2	Q13868	293 aa	Known RBP	11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	KLK9	Q2XQG4	91 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	BSX	Q3C1V8	233 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	C8orf86	Q6ZUL3	223 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	CXorf58	Q96LI9	332 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	NMES1	Q9C002	83 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	KLK9	Q9UKQ9	250 aa		11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123	PAIP2B	Q9ULR5	123 aa	Known RBP	11.3	□□□□□ -0.6
BRCA1-223	ENST00000494123		L7N2F9	121 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	RRAS2	P62070	204 aa	Predicted RBP	11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	VAMP2	P63027	116 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	FCN2	Q15485	313 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	C2orf83	Q53S99	150 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	OR4F17	Q8NGA8	305 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	EEF1AKMT3	Q96AZ1	226 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	OR4F4	Q96R69	305 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	RAB40C	Q96S21	281 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	RCL1	Q9Y2P8	373 aa	Known RBP	11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123		S4R3C0	116 aa		11.29	□□□□□ -0.6
BRCA1-223	ENST00000494123	IGHV3-21	A0A0B4J1V1	117 aa		11.28	□□□□□ -0.6
BRCA1-223	ENST00000494123		H3BP45	60 aa		11.28	□□□□□ -0.6
BRCA1-223	ENST00000494123		K7EPK0	472 aa		11.28	□□□□□ -0.6
BRCA1-223	ENST00000494123	PVALB	P20472	110 aa	Predicted RBP	11.28	□□□□□ -0.6
BRCA1-223	ENST00000494123	ATP5I	P56385	69 aa	Predicted RBP	11.28	□□□□□ -0.6
BRCA1-223	ENST00000494123	RAB11A	P62491	216 aa		11.28	□□□□□ -0.6
BRCA1-223	ENST00000494123	RAB32	Q13637	225 aa		11.28	□□□□□ -0.6
BRCA1-223	ENST00000494123	PSENEN	Q9NZ42	101 aa		11.28	□□□□□ -0.6
BRCA1-223	ENST00000494123	ANKRD34B	A5PLL1	514 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	MFSD2B	A6NFX1	497 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123		I3L521	148 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	MT-CO2	P00403	227 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	IGHV3-23	P01764	117 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	IFNA4	P05014	189 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	OR8U8	P0C7N1	319 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	CXCL3	P19876	107 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	OPRK1	P41145	380 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	IL15RA	Q13261	267 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	DEFB136	Q30KP8	78 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	LRRC37A5P	Q49AS3	106 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	SPANXN5	Q5MJ07	72 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	ZNF343	Q6P1L6	599 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	OR11H7	Q8NGC8	314 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	VN1R17P	Q8TDU5	208 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	SMIM8	Q96KF7	97 aa		11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	STRAP	Q9Y3F4	350 aa	Known RBP	11.27	□□□□□ -0.6
BRCA1-223	ENST00000494123	TRBV7-1	A0A0A6YYK4	115 aa		11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	PF4	P02776	101 aa		11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	RLN2	P04090	185 aa		11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	RUNX1	Q01196	453 aa		11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	FAM209B	Q5JX69	171 aa		11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	OR11H1	Q8NG94	326 aa		11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	RNASEH2C	Q8TDP1	164 aa	Known RBP	11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	SCARB1	Q8WTV0	552 aa		11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	DPF1	Q92782	380 aa		11.27	□□□□□ -0.61
BRCA1-223	ENST00000494123	RPS10-NUDT3	A0A1W2PQS6	291 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123		I3L2K1	104 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123		K7EIM0	57 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	BCAP31	P51572	246 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	TAS2R30	P59541	319 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	PVRIG	Q6DKI7	326 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	UBAC2	Q8NBM4	344 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	OR1N2	Q8NGR9	330 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	TMEM170A	Q8WVE7	144 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	PPP1R1C	Q8WVI7	109 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	RAX2	Q96IS3	184 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	DUX3	Q96PT4	197 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	OR4C12	Q96R67	309 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	ZNF436	Q9C0F3	470 aa	Predicted RBP	11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	RANGRF	Q9HD47	186 aa	Predicted RBP	11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	C21orf62	Q9NYP8	219 aa		11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	PEF1	Q9UBV8	284 aa	Known RBP	11.26	□□□□□ -0.61
BRCA1-223	ENST00000494123	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	C15orf62	A8K5M9	175 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	CCL24	O00175	119 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	TSC22D2	O75157	780 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	TMEM50A	O95807	157 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	IGHV3-48	P01763	117 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	HSPB1	P04792	205 aa	Known RBP	11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	PET100	P0DJ07	73 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	ZNF616	Q08AN1	781 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123		Q56UQ5	140 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	ETFRF1	Q6IPR1	90 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	ACSM6	Q6P461	480 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	CLEC19A	Q6UXS0	136 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	ETV3L	Q6ZN32	361 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123		Q6ZNX1	250 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	ZNF502	Q8TBZ5	544 aa		11.25	□□□□□ -0.61
BRCA1-223	ENST00000494123	IGHV4OR15-8	A0A075B7B6	117 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123		A0A087WW49	117 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	LINC01619	G3V211	115 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	DEDD	O75618	318 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	MYCNOS	P40205	109 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	CAV2	P51636	162 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	MFAP4	P55083	255 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	PAX9	P55771	341 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	ASB13	Q8WXK3	278 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	WDR89	Q96FK6	387 aa	Predicted RBP	11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	CCDC140	Q96MF4	163 aa		11.24	□□□□□ -0.61
BRCA1-223	ENST00000494123	GAR1	Q9NY12	217 aa	Known RBP	11.24	□□□□□ -0.61

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