RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 RAB40CQ96S21 281 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 CITED2Q99967 270 aaPredicted RBP13.38□□□□□ -0.27
LIME1-208ENST00000493265 SLA2Q9H6Q3 261 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 IGLV11-55A0A075B6I3 123 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 IGHV3-48P01763 117 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 IGHV3-23P01764 117 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 IFNA4P05014 189 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 GIPP09681 153 aaPredicted RBP13.37□□□□□ -0.27
LIME1-208ENST00000493265 HIST1H1BP16401 226 aaKnown RBP13.37□□□□□ -0.27
LIME1-208ENST00000493265 PAX9P55771 341 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 RPL23AP62750 156 aaKnown RBP13.37□□□□□ -0.27
LIME1-208ENST00000493265 ZNF114Q8NC26 417 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 TMEM170AQ8WVE7 144 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 SMIM8Q96KF7 97 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 OR4C12Q96R67 309 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 ZFP57Q9NU63 452 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 OR5AC2Q9NZP5 309 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 STRAPQ9Y3F4 350 aaKnown RBP13.37□□□□□ -0.27
LIME1-208ENST00000493265 U3KQ87 197 aa13.37□□□□□ -0.27
LIME1-208ENST00000493265 C15orf62A8K5M9 175 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 NUDT19A8MXV4 375 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 MPC2O95563 127 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 OR8U8P0C7N1 319 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 CAV2P51636 162 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 RPP30P78346 268 aaKnown RBP13.36□□□□□ -0.27
LIME1-208ENST00000493265 DEFA6Q01524 100 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 ATP5G2Q06055 141 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 C15orf32Q32M92 178 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 NSUN5P1Q3KNT7 163 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 C2orf83Q53S99 150 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 C18orf65Q6ZTR6 163 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 NECAP1Q8NC96 275 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 OR1L6Q8NGR2 347 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 THYN1Q9P016 225 aa13.36□□□□□ -0.27
LIME1-208ENST00000493265 TRBV9A0A0B4J1U6 114 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 H0YIZ8 118 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 SMLR1H3BR10 107 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 DEDDO75618 318 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 RAP2BP61225 183 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 RAB11AP62491 216 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 BSXQ3C1V8 233 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 TREML4Q6UXN2 200 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 ZNF491Q8N8L2 437 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 GNB4Q9HAV0 340 aa13.35□□□□□ -0.27
LIME1-208ENST00000493265 CMYA5Q8N3K9 4069 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 A0A0G2JLM5 398 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 MFSD2BA6NFX1 497 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 FAM24AA6NFZ4 105 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 FAM223BA6NKX1 122 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 LY86O95711 162 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 MT-CO2P00403 227 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 METTL15P1P0C7V9 234 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 PET100P0DJ07 73 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 OPRK1P41145 380 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 EXOSC2Q13868 293 aaKnown RBP13.34□□□□□ -0.27
LIME1-208ENST00000493265 KIAA0141Q14154 515 aaPredicted RBP13.34□□□□□ -0.27
LIME1-208ENST00000493265 MLANAQ16655 118 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 Q5BKY6 102 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 OR8G2PQ6IF36 304 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 ETV3LQ6ZN32 361 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 NOXA1Q86UR1 476 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 FAM223AQ8IWN6 122 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 RNF152Q8N8N0 203 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 KLHL30-AS1Q8NEE0 82 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 OR2T35Q8NGX2 323 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 THAP6Q8TBB0 222 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 RANGRFQ9HD47 186 aaPredicted RBP13.34□□□□□ -0.27
LIME1-208ENST00000493265 MBD2Q9UBB5 411 aa13.34□□□□□ -0.27
LIME1-208ENST00000493265 TSSC4Q9Y5U2 329 aaPredicted RBP13.34□□□□□ -0.27
LIME1-208ENST00000493265 TRAV14DV4A0A0A6YYC5 116 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 ANKRD34BA5PLL1 514 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 E5RGE8 158 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 TSC22D2O75157 780 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 CCNKO75909 580 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 BRI3O95415 125 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 TAS2R30P59541 319 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 PRSS54Q6PEW0 395 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 UBAC2Q8NBM4 344 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 DCUN1D4Q92564 292 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 USMG5Q96IX5 58 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 RNF126Q9BV68 326 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 C11orf1Q9H5F2 150 aa13.33□□□□□ -0.28
LIME1-208ENST00000493265 K7EIM0 57 aa13.32□□□□□ -0.28
LIME1-208ENST00000493265 CORTO00230 105 aa13.32□□□□□ -0.28
LIME1-208ENST00000493265 MYOZ3Q8TDC0 251 aa13.32□□□□□ -0.28
LIME1-208ENST00000493265 RNASEH2CQ8TDP1 164 aaKnown RBP13.32□□□□□ -0.28
LIME1-208ENST00000493265 ASB13Q8WXK3 278 aa13.32□□□□□ -0.28
LIME1-208ENST00000493265 EEF1AKMT3Q96AZ1 226 aa13.32□□□□□ -0.28
LIME1-208ENST00000493265 UBE2E2Q96LR5 201 aa13.32□□□□□ -0.28
LIME1-208ENST00000493265 CITED1Q99966 193 aa13.32□□□□□ -0.28
LIME1-208ENST00000493265 IGSF23A1L1A6 192 aa13.31□□□□□ -0.28
LIME1-208ENST00000493265 I3L2K1 104 aa13.31□□□□□ -0.28
LIME1-208ENST00000493265 CST7O76096 145 aa13.31□□□□□ -0.28
LIME1-208ENST00000493265 CDX1P47902 265 aaPredicted RBP13.31□□□□□ -0.28
LIME1-208ENST00000493265 ATP5IP56385 69 aaPredicted RBP13.31□□□□□ -0.28
LIME1-208ENST00000493265 FGL1Q08830 312 aa13.31□□□□□ -0.28
LIME1-208ENST00000493265 DEFB136Q30KP8 78 aa13.31□□□□□ -0.28
LIME1-208ENST00000493265 Q56UQ5 140 aa13.31□□□□□ -0.28
LIME1-208ENST00000493265 ACSM6Q6P461 480 aa13.31□□□□□ -0.28
LIME1-208ENST00000493265 C8orf86Q6ZUL3 223 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms