RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 TLCD2A6NGC4 264 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 C4orf51C9J302 202 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 LGALS9O00182 355 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 SLC37A4O43826 429 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 HYPMO75409 117 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 RPL22P35268 128 aaKnown RBP3.28□□□□□ -1.88
BRCA1-220ENST00000492859 FOXF1Q12946 379 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 EBI3Q14213 229 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 MRPL2Q5T653 305 aaKnown RBP3.28□□□□□ -1.88
BRCA1-220ENST00000492859 FAM219BQ5XKK7 198 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 MSRB3Q8IXL7 192 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 C9orf40Q8IXQ3 194 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 C6orf223Q8N319 242 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 C10orf111Q8N326 155 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 WFDC11Q8NEX6 87 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 MAL2Q969L2 176 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 RNF126Q9BV68 326 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 TAAR3PQ9P1P4 343 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 C11orf21Q9P2W6 132 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 RIMBP3CA6NJZ7 1639 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 RIMBP3BA6NNM3 1639 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 RIMBP3Q9UFD9 1639 aa3.28□□□□□ -1.88
BRCA1-220ENST00000492859 TANC1Q9C0D5 1861 aa3.28□□□□□ -1.89
BRCA1-220ENST00000492859 PLXNA4Q9HCM2 1894 aa3.28□□□□□ -1.89
BRCA1-220ENST00000492859 PXDNLA1KZ92 1463 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 NCOA2Q15596 1464 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 ITSN1Q15811 1721 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 TRAV41A0A0B4J266 112 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 LOC107986453A0A1B0GWG9 222 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 EPOPA6NHQ4 379 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 A8MWV9 139 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 C12orf77C9JDV5 145 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 F8W1H4 67 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 M0R1X1 148 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 M0R2P5 195 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 M0R381 172 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 NDUFB6O95139 128 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 TRBV12-3P01733 135 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 IGHV3-9P01782 118 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 HLA-DQB1P01920 261 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 PYYP10082 97 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 CRYGAP11844 174 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 ACVRL1P37023 503 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 QRFPP83859 136 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 LINC00242Q5T6M2 205 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 STPG1Q5TH74 334 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 C1orf140Q5VVS0 124 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 ZNF660Q6AZW8 331 aaPredicted RBP3.27□□□□□ -1.89
BRCA1-220ENST00000492859 XAF1Q6GPH4 301 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 LINC00305Q7Z4B0 112 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 PCP2Q8IVA1 136 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 MKXQ8IYA7 352 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 RPP25LQ8N5L8 163 aaKnown RBP3.27□□□□□ -1.89
BRCA1-220ENST00000492859 OR1J4Q8NGS1 313 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 OR9G1Q8NH87 305 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 ZNF721Q8TF20 911 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 CHCHD10Q8WYQ3 142 aaPredicted RBP3.27□□□□□ -1.89
BRCA1-220ENST00000492859 GNPNAT1Q96EK6 184 aaPredicted RBP3.27□□□□□ -1.89
BRCA1-220ENST00000492859 KCNS1Q96KK3 526 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 C17orf77Q96MU5 243 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 OR2A5Q96R48 311 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 AGPAT4-IT1Q9H0P7 198 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 NAA60Q9H7X0 242 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 CACFD1Q9UGQ2 172 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 AK3Q9UIJ7 227 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 LINC00527Q9UJ94 153 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 V9GY05 133 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 IFT172Q9UG01 1749 aa3.27□□□□□ -1.89
BRCA1-220ENST00000492859 RALGAPA2Q2PPJ7 1873 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 DOCK8Q8NF50 2099 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 TRAV13-1A0A0B4J241 112 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 TRBV5-4A0A0C4DH59 114 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 C3orf85A0A1B0GTC6 90 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 LOC389332A0A1B0GUA5 103 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 C9orf118A6NHY6 69 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 A8MUN3 132 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 E9PLD3 99 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 TMEM250H0YL14 139 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 LST1O00453 97 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 UPK2O00526 184 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 TCRAP04437 139 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 SLC25A5P05141 298 aaKnown RBP3.26□□□□□ -1.89
BRCA1-220ENST00000492859 FCGR3AP08637 254 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 H2AFZP0C0S5 128 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 PSMB2P49721 201 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 MP68P56378 58 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 TGIF1Q15583 401 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 Q56UQ5 140 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 SPRNQ5BIV9 151 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 ZNF880Q6PDB4 577 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 Q6ZS49 121 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 Q6ZSV7 163 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 PTAR1Q7Z6K3 402 aaPredicted RBP3.26□□□□□ -1.89
BRCA1-220ENST00000492859 PRNTQ86SH4 94 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 GTSCR1Q86UQ5 136 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 ZNF709Q8N972 641 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 OR51H1Q8NH63 302 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 NTN5Q8WTR8 489 aaPredicted RBP3.26□□□□□ -1.89
BRCA1-220ENST00000492859 NABP1Q96AH0 204 aa3.26□□□□□ -1.89
BRCA1-220ENST00000492859 IMMP2LQ96T52 175 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms