RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 S100A5P33763 92 aa18.59■□□□□ 0.57
UPF3A-209ENST00000492270 ETV6P41212 452 aa18.59■□□□□ 0.57
UPF3A-209ENST00000492270 CD81P60033 236 aa18.59■□□□□ 0.57
UPF3A-209ENST00000492270 ERHP84090 104 aaKnown RBP18.59■□□□□ 0.57
UPF3A-209ENST00000492270 GUCA2BQ16661 112 aa18.59■□□□□ 0.57
UPF3A-209ENST00000492270 BTNL8Q6UX41 500 aa18.59■□□□□ 0.57
UPF3A-209ENST00000492270 TMEM61Q8N0U2 210 aa18.59■□□□□ 0.57
UPF3A-209ENST00000492270 RBPMSQ93062 196 aaKnown RBP18.59■□□□□ 0.57
UPF3A-209ENST00000492270 ZNF414Q96IQ9 312 aa18.59■□□□□ 0.57
UPF3A-209ENST00000492270 WWC2-AS2Q96NR7 200 aa18.59■□□□□ 0.57
UPF3A-209ENST00000492270 IGHV3OR16-8A0A075B7F1 116 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 CD7P09564 240 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 DHODHQ02127 395 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 TMEM268Q5VZI3 342 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 SPSB3Q6PJ21 355 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 PINX1Q96BK5 328 aaKnown RBP18.58■□□□□ 0.56
UPF3A-209ENST00000492270 ATP6V0BQ99437 205 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 PDCD10Q9BUL8 212 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 PALMDQ9NP74 551 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 UFC1Q9Y3C8 167 aa18.58■□□□□ 0.56
UPF3A-209ENST00000492270 CTSGP08311 255 aa18.57■□□□□ 0.56
UPF3A-209ENST00000492270 C8orf88P0DMB2 117 aa18.57■□□□□ 0.56
UPF3A-209ENST00000492270 HOXA1P49639 335 aaPredicted RBP18.57■□□□□ 0.56
UPF3A-209ENST00000492270 ZNF57Q68EA5 555 aaPredicted RBP18.57■□□□□ 0.56
UPF3A-209ENST00000492270 NEURL2Q9BR09 285 aa18.57■□□□□ 0.56
UPF3A-209ENST00000492270 WFDC10AQ9H1F0 79 aa18.57■□□□□ 0.56
UPF3A-209ENST00000492270 INS-IGF2F8WCM5 200 aa18.56■□□□□ 0.56
UPF3A-209ENST00000492270 ELLP55199 621 aaPredicted RBP18.56■□□□□ 0.56
UPF3A-209ENST00000492270 TMEM187Q14656 261 aa18.56■□□□□ 0.56
UPF3A-209ENST00000492270 FAM219AQ8IW50 185 aa18.56■□□□□ 0.56
UPF3A-209ENST00000492270 TOMM5Q8N4H5 51 aa18.56■□□□□ 0.56
UPF3A-209ENST00000492270 GPR146Q96CH1 333 aa18.56■□□□□ 0.56
UPF3A-209ENST00000492270 RCHY1Q96PM5 261 aa18.56■□□□□ 0.56
UPF3A-209ENST00000492270 NDUFA4O00483 81 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 SCAF4O95104 1147 aaKnown RBP18.55■□□□□ 0.56
UPF3A-209ENST00000492270 RNASE2P10153 161 aaKnown RBP18.55■□□□□ 0.56
UPF3A-209ENST00000492270 AKR1C4P17516 323 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 SNCAP37840 140 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 MFAP4P55083 255 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 SUPT4H1P63272 117 aaKnown RBP18.55■□□□□ 0.56
UPF3A-209ENST00000492270 MARC2Q969Z3 335 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 GALNT14Q96FL9 552 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 C20orf24Q9BUV8 137 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 MRPL27Q9P0M9 148 aaKnown RBP18.55■□□□□ 0.56
UPF3A-209ENST00000492270 CACNG5Q9UF02 275 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 TMEM56-RWDD3S4R434 201 aa18.55■□□□□ 0.56
UPF3A-209ENST00000492270 ZNF207O43670 478 aaKnown RBP18.54■□□□□ 0.56
UPF3A-209ENST00000492270 FAUP35544 74 aaKnown RBP18.54■□□□□ 0.56
UPF3A-209ENST00000492270 AARDQ4LEZ3 155 aa18.54■□□□□ 0.56
UPF3A-209ENST00000492270 SCGB3A2Q96PL1 93 aa18.54■□□□□ 0.56
UPF3A-209ENST00000492270 TUBA4BQ9H853 241 aa18.54■□□□□ 0.56
UPF3A-209ENST00000492270 FCGR2BP31994 310 aaPredicted RBP18.53■□□□□ 0.56
UPF3A-209ENST00000492270 AP3S2P59780 193 aa18.53■□□□□ 0.56
UPF3A-209ENST00000492270 DEFB125Q8N687 156 aa18.53■□□□□ 0.56
UPF3A-209ENST00000492270 TM2D3Q9BRN9 247 aa18.53■□□□□ 0.56
UPF3A-209ENST00000492270 ENY2Q9NPA8 101 aa18.53■□□□□ 0.56
UPF3A-209ENST00000492270 DAZ1Q9NQZ3 744 aaKnown RBP18.53■□□□□ 0.56
UPF3A-209ENST00000492270 CTNNBIP1Q9NSA3 81 aaPredicted RBP18.53■□□□□ 0.56
UPF3A-209ENST00000492270 NUPL2O15504 423 aaKnown RBP18.52■□□□□ 0.56
UPF3A-209ENST00000492270 NXPH3O95157 252 aa18.52■□□□□ 0.56
UPF3A-209ENST00000492270 SPCS3P61009 180 aa18.52■□□□□ 0.56
UPF3A-209ENST00000492270 PVRIGQ6DKI7 326 aa18.52■□□□□ 0.56
UPF3A-209ENST00000492270 TXN2Q99757 166 aa18.52■□□□□ 0.56
UPF3A-209ENST00000492270 SRRQ9GZT4 340 aa18.52■□□□□ 0.56
UPF3A-209ENST00000492270 GAR1Q9NY12 217 aaKnown RBP18.52■□□□□ 0.56
UPF3A-209ENST00000492270 KCNIP3Q9Y2W7 256 aa18.52■□□□□ 0.56
UPF3A-209ENST00000492270 HAGHQ16775 308 aa18.51■□□□□ 0.55
UPF3A-209ENST00000492270 SPANXN2Q5MJ10 180 aa18.51■□□□□ 0.55
UPF3A-209ENST00000492270 OR52E5Q8NH55 327 aa18.51■□□□□ 0.55
UPF3A-209ENST00000492270 IL22RA2Q969J5 263 aa18.51■□□□□ 0.55
UPF3A-209ENST00000492270 ZMAT4Q9H898 229 aa18.51■□□□□ 0.55
UPF3A-209ENST00000492270 GNG7O60262 68 aa18.5■□□□□ 0.55
UPF3A-209ENST00000492270 BSXQ3C1V8 233 aa18.5■□□□□ 0.55
UPF3A-209ENST00000492270 TMED4Q7Z7H5 227 aa18.5■□□□□ 0.55
UPF3A-209ENST00000492270 FNDC4Q9H6D8 234 aaPredicted RBP18.5■□□□□ 0.55
UPF3A-209ENST00000492270 OR11H12B2RN74 326 aa18.49■□□□□ 0.55
UPF3A-209ENST00000492270 SUB1P53999 127 aaKnown RBP eCLIP18.49■□□□□ 0.55
UPF3A-209ENST00000492270 RELQ04864 619 aaPredicted RBP18.49■□□□□ 0.55
UPF3A-209ENST00000492270 RBPMS2Q6ZRY4 209 aaKnown RBP18.49■□□□□ 0.55
UPF3A-209ENST00000492270 LYZL2Q7Z4W2 148 aa18.49■□□□□ 0.55
UPF3A-209ENST00000492270 OR52B4Q8NGK2 314 aa18.49■□□□□ 0.55
UPF3A-209ENST00000492270 SRD5A3Q9H8P0 318 aa18.49■□□□□ 0.55
UPF3A-209ENST00000492270 MRPL36Q9P0J6 103 aaKnown RBP18.49■□□□□ 0.55
UPF3A-209ENST00000492270 K7EMT4 169 aa18.48■□□□□ 0.55
UPF3A-209ENST00000492270 YIF1AO95070 293 aa18.48■□□□□ 0.55
UPF3A-209ENST00000492270 MLANAQ16655 118 aa18.48■□□□□ 0.55
UPF3A-209ENST00000492270 LINC00322Q6ZN03 302 aaPredicted RBP18.48■□□□□ 0.55
UPF3A-209ENST00000492270 DUSP18Q8NEJ0 188 aa18.48■□□□□ 0.55
UPF3A-209ENST00000492270 DNAH7Q8WXX0 4024 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 TRAV25A0A0B4J276 109 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 A0A0B4J2A0 478 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 C15orf62A8K5M9 175 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 CEBPZOSA8MTT3 80 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 CORTO00230 105 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 SULT1A3P0DMM9 295 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 SULT1A4P0DMN0 295 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 BAK1Q16611 211 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 NMSQ5H8A3 153 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 SLC16A13Q7RTY0 426 aa18.47■□□□□ 0.55
UPF3A-209ENST00000492270 HEYLQ9NQ87 328 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms