RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 GALNT14Q96FL9 552 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 TXN2Q99757 166 aa10.09□□□□□ -0.79
COL6A3-211ENST00000491233 NXF2Q9GZY0 626 aaKnown RBP10.09□□□□□ -0.79
COL6A3-211ENST00000491233 IGKV3-7A0A075B6H7 116 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 IGHV3OR16-13A0A075B7E8 117 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 IGHV3-74A0A0B4J1X5 117 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 NUPR2A6NF83 97 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 IGKV1-5P01602 117 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 AKR1C2P52895 323 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 PPP5CP53041 499 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 RND3P61587 244 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 ERHP84090 104 aaKnown RBP10.08□□□□□ -0.8
COL6A3-211ENST00000491233 ZNF124Q15973 351 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 LHFPL1Q86WI0 220 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 APRG1Q8IVJ8 170 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 RNF183Q96D59 192 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 OR10C1Q96KK4 312 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 MAP6D1Q9H9H5 199 aa10.08□□□□□ -0.8
COL6A3-211ENST00000491233 RORCP51449 518 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 PIGPP57054 158 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 MZT2AQ6P582 158 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 SLC35G3Q8N808 338 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 OR52I2Q8NH67 350 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 ZNF486Q96H40 463 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-211ENST00000491233 TP53RKQ96S44 253 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 GINS3Q9BRX5 216 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 C6orf62Q9GZU0 229 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-211ENST00000491233 NAA50Q9GZZ1 169 aaKnown RBP10.07□□□□□ -0.8
COL6A3-211ENST00000491233 EXTL2Q9UBQ6 330 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 KLK11Q9UBX7 282 aa10.07□□□□□ -0.8
COL6A3-211ENST00000491233 TRAV14DV4A0A0A6YYC5 116 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 ST8SIA3O43173 380 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 CD3DP04234 171 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 P0C879 139 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 FAM90A2PQ658T7 463 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 TOMM20LQ6UXN7 152 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 TCF24Q7RTU0 167 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 GBGT1Q8N5D6 347 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 ARRDC1Q8N5I2 433 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 AP3S1Q92572 193 aa10.06□□□□□ -0.8
COL6A3-211ENST00000491233 GABARAPO95166 117 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 LY6G6CO95867 125 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 SNCAP37840 140 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 NPBWR1P48145 328 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 TRIM16LQ309B1 348 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 CEMP1Q6PRD7 247 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-211ENST00000491233 ZNF600Q6ZNG1 722 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 TMEM217Q8N7C4 229 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 DUSP18Q8NEJ0 188 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 ST8SIA2Q92186 375 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 PDCD10Q9BUL8 212 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 ZFAND3Q9H8U3 227 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 MTFP1Q9UDX5 166 aa10.05□□□□□ -0.8
COL6A3-211ENST00000491233 A0A0B4J293 547 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 IGHV3-66A0A0C4DH42 116 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 C3orf85A0A1B0GTC6 90 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 MPTX1A8MV57 137 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 INS-IGF2F8WCM5 200 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 IFNA17P01571 189 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 APOHP02749 345 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-211ENST00000491233 SMIM18P0DKX4 95 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 RNASE2P10153 161 aaKnown RBP10.04□□□□□ -0.8
COL6A3-211ENST00000491233 ZNF182P17025 639 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-211ENST00000491233 ATF4P18848 351 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-211ENST00000491233 TBPP20226 339 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 HOXA1P49639 335 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-211ENST00000491233 CMC4P56277 68 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-211ENST00000491233 CTF1Q16619 201 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 SP6Q3SY56 376 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 SCGB2B2Q4G0G5 96 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 CCDC71LQ8N9Z2 235 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 OR4D10Q8NGI6 311 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 OR13C8Q8NGS7 320 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 COPZ2Q9P299 210 aa10.04□□□□□ -0.8
COL6A3-211ENST00000491233 PUS1Q9Y606 427 aaKnown RBP eCLIP10.04□□□□□ -0.8
COL6A3-211ENST00000491233 A0A0G2JRQ6 117 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 CORTO00230 105 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 ATG12O94817 140 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 UCP1P25874 307 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 ETV6P41212 452 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 TAS2R19P59542 299 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 PAFAH1B2P68402 229 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 RNASE11Q8TAA1 199 aaKnown RBP10.03□□□□□ -0.8
COL6A3-211ENST00000491233 ABHD1Q96SE0 405 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 CSTL1Q9H114 145 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 VSIRQ9H7M9 311 aa10.03□□□□□ -0.8
COL6A3-211ENST00000491233 MRPL36Q9P0J6 103 aaKnown RBP10.03□□□□□ -0.8
COL6A3-211ENST00000491233 A0A1B0GU03 582 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 DFFBO76075 338 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 RAB3DO95716 219 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 TMEM50AO95807 157 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 CD74P04233 296 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 CD5P06127 495 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 SUB1P53999 127 aaKnown RBP eCLIP10.02□□□□□ -0.81
COL6A3-211ENST00000491233 GPR107Q5VW38 600 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 PVRIGQ6DKI7 326 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 LILRB2Q8N423 598 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 TMEM229BQ8NBD8 167 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 ZFAND1Q8TCF1 268 aa10.02□□□□□ -0.81
COL6A3-211ENST00000491233 MARCH1Q8TCQ1 289 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms