RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SAMD12Q8N8I0 201 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 OR11H2Q8NH07 326 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 C11orf45Q8TAV5 145 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 PINX1Q96BK5 328 aaKnown RBP9.08□□□□□ -0.96
CPSF3-204ENST00000489403 CMTM3Q96MX0 182 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 FAM212BQ9NTI7 297 aaPredicted RBP9.08□□□□□ -0.96
CPSF3-204ENST00000489403 HECTD4Q9Y4D8 3996 aa9.08□□□□□ -0.96
CPSF3-204ENST00000489403 GNG7O60262 68 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 CA1P00915 261 aaPredicted RBP9.07□□□□□ -0.96
CPSF3-204ENST00000489403 APOHP02749 345 aaPredicted RBP9.07□□□□□ -0.96
CPSF3-204ENST00000489403 PRSS3P35030 304 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 RBMS2Q15434 407 aaKnown RBP9.07□□□□□ -0.96
CPSF3-204ENST00000489403 TCF24Q7RTU0 167 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 H2BFWTQ7Z2G1 175 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 LILRB2Q8N423 598 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 OR4A16Q8NH70 328 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 ST8SIA2Q92186 375 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 MRGPRFQ96AM1 343 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 MFFQ9GZY8 342 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 VSIRQ9H7M9 311 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 FBXL17Q9UF56 701 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 VPS13DQ5THJ4 4388 aa9.07□□□□□ -0.96
CPSF3-204ENST00000489403 DEFB4AO15263 64 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 ST8SIA3O43173 380 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 EIF4EP06730 217 aaKnown RBP9.06□□□□□ -0.96
CPSF3-204ENST00000489403 TSPAN5P62079 268 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 LSM3P62310 102 aaKnown RBP9.06□□□□□ -0.96
CPSF3-204ENST00000489403 PAFAH1B2P68402 229 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 KCTD21Q4G0X4 260 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 SPINK9Q5DT21 86 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 LEMD1Q68G75 181 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 LPCAT3Q6P1A2 487 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 TOMM20LQ6UXN7 152 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 FAM24BQ8N5W8 94 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 GPX8Q8TED1 209 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 GINS3Q9BRX5 216 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 MS4A6AQ9H2W1 248 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 ZFAND3Q9H8U3 227 aa9.06□□□□□ -0.96
CPSF3-204ENST00000489403 IGHV3-66A0A0C4DH42 116 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 S100GP29377 79 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 UCP3P55916 312 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 DEFB131AP59861 70 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 HSPE1P61604 102 aaKnown RBP9.05□□□□□ -0.96
CPSF3-204ENST00000489403 ERHP84090 104 aaKnown RBP9.05□□□□□ -0.96
CPSF3-204ENST00000489403 PRR20EP86478 221 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 PRR20CP86479 221 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 PRR20DP86480 221 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 PRR20BP86481 221 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 PRR20AP86496 221 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 IZUMO4Q1ZYL8 232 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 YIPF6Q96EC8 236 aa9.05□□□□□ -0.96
CPSF3-204ENST00000489403 PUS1Q9Y606 427 aaKnown RBP eCLIP9.05□□□□□ -0.96
CPSF3-204ENST00000489403 DNASE2O00115 360 aaPredicted RBP9.04□□□□□ -0.96
CPSF3-204ENST00000489403 DFFBO76075 338 aa9.04□□□□□ -0.96
CPSF3-204ENST00000489403 IFNA4P05014 189 aa9.04□□□□□ -0.96
CPSF3-204ENST00000489403 CD5P06127 495 aa9.04□□□□□ -0.96
CPSF3-204ENST00000489403 NPBWR1P48145 328 aa9.04□□□□□ -0.96
CPSF3-204ENST00000489403 TMEM187Q14656 261 aa9.04□□□□□ -0.96
CPSF3-204ENST00000489403 ZNF600Q6ZNG1 722 aa9.04□□□□□ -0.96
CPSF3-204ENST00000489403 DUSP18Q8NEJ0 188 aa9.04□□□□□ -0.96
CPSF3-204ENST00000489403 C2CD4CQ8TF44 421 aa9.04□□□□□ -0.96
CPSF3-204ENST00000489403 TRAV2A0A0B4J234 112 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 A0A1B0GU03 582 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 TMEM50AO95807 157 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 IGKV1-5P01602 117 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 RCVRNP35243 200 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 SNX29P2Q8IUI4 249 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 Q8NAQ8 132 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 SCPEP1Q9HB40 452 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 COMMD3Q9UBI1 195 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 PCLOQ9Y6V0 5065 aa9.03□□□□□ -0.96
CPSF3-204ENST00000489403 INS-IGF2F8WCM5 200 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 M0QYG6 137 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 GIG44P09565 113 aaPredicted RBP9.02□□□□□ -0.97
CPSF3-204ENST00000489403 P0C879 139 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 TCTAP57738 103 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 RND3P61587 244 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 RPL11P62913 178 aaKnown RBP9.02□□□□□ -0.97
CPSF3-204ENST00000489403 PVRIGQ6DKI7 326 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 STHQ8IWL8 128 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 SLC35G3Q8N808 338 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 TP53RKQ96S44 253 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 MRPL36Q9P0J6 103 aaKnown RBP9.02□□□□□ -0.97
CPSF3-204ENST00000489403 RABAC1Q9UI14 185 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 APLNQ9ULZ1 77 aa9.02□□□□□ -0.97
CPSF3-204ENST00000489403 A0A0B4J293 547 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 K7EQG2 157 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 CORTO00230 105 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 APOA1P02647 267 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 RNASE2P10153 161 aaKnown RBP9.01□□□□□ -0.97
CPSF3-204ENST00000489403 PI3P19957 117 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 SNCAP37840 140 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 TRPT1Q86TN4 253 aaKnown RBP9.01□□□□□ -0.97
CPSF3-204ENST00000489403 LHFPL1Q86WI0 220 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 HRH4Q9H3N8 390 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 FNDC4Q9H6D8 234 aaPredicted RBP9.01□□□□□ -0.97
CPSF3-204ENST00000489403 TMEM231Q9H6L2 316 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 AGRNO00468 2067 aa9.01□□□□□ -0.97
CPSF3-204ENST00000489403 IGHV4-28A0A0C4DH34 117 aa9□□□□□ -0.97
CPSF3-204ENST00000489403 SMIM31A0A1B0GVY4 71 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms