RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 RYR2Q92736 4967 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 SACSQ9NZJ4 4579 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 C15orf61A6NNL5 157 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 CEBPZOSA8MTT3 80 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 WRBO00258 174 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 MED6O75586 246 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 IGKV1-5P01602 117 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 IL6RP08887 468 aaPredicted RBP6.78□□□□□ -1.32
USP4-213ENST00000488520 OR2B8PP59922 312 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 SPCS3P61009 180 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 RPP30P78346 268 aaKnown RBP6.78□□□□□ -1.32
USP4-213ENST00000488520 CASC10Q5T4H9 136 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 GGNBP1Q5YKI7 109 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 GSG1LQ6UXU4 331 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 ZNF429Q86V71 674 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 OR52B4Q8NGK2 314 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 OR1L6Q8NGR2 347 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 LYSTQ99698 3801 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 SRSF8Q9BRL6 282 aaKnown RBP6.78□□□□□ -1.32
USP4-213ENST00000488520 PLEKHA3Q9HB20 300 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 HEYLQ9NQ87 328 aaPredicted RBP6.78□□□□□ -1.32
USP4-213ENST00000488520 THYN1Q9P016 225 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 CACNG5Q9UF02 275 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 PFDN2Q9UHV9 154 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 FOXA2Q9Y261 457 aaPredicted RBP6.78□□□□□ -1.32
USP4-213ENST00000488520 ZNF257Q9Y2Q1 563 aa6.78□□□□□ -1.32
USP4-213ENST00000488520 LSM4Q9Y4Z0 139 aaKnown RBP6.78□□□□□ -1.32
USP4-213ENST00000488520 A0A0B4J293 547 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 A0A0G2JLM5 398 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 HMX3A6NHT5 357 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 G3V318 75 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 ST8SIA3O43173 380 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 ELANEP08246 267 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 APELAP0DMC3 54 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 OR13C7P0DN81 318 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 SLC25A6P12236 298 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 HIST1H1BP16401 226 aaKnown RBP6.77□□□□□ -1.33
USP4-213ENST00000488520 MYCNOSP40205 109 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 HOXA1P49639 335 aaPredicted RBP6.77□□□□□ -1.33
USP4-213ENST00000488520 IZUMO4Q1ZYL8 232 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 SLC25A24Q6NUK1 477 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 NOXA1Q86UR1 476 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 TTC9CQ8N5M4 171 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 OR52E5Q8NH55 327 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 LHFPL5Q8TAF8 219 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 MUC7Q8TAX7 377 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 MS4A10Q96PG2 267 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 P2RX4Q99571 388 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 SLA2Q9H6Q3 261 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 NDUFA4L2Q9NRX3 87 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 ZFP57Q9NU63 452 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 TMEM14BQ9NUH8 114 aa6.77□□□□□ -1.33
USP4-213ENST00000488520 TNCP24821 2201 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 H3BUA1 57 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 ADAP1O75689 374 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 LY86O95711 162 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 TRGV3P03979 118 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 RLN2P04090 185 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 SPNP16150 400 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 PSMB6P28072 239 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 RAB9AP51151 201 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 CYCSP99999 105 aaKnown RBP6.76□□□□□ -1.33
USP4-213ENST00000488520 PRCDQ00LT1 54 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 FOXE3Q13461 319 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 TATDN3Q17R31 274 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 IAH1Q2TAA2 248 aaPredicted RBP6.76□□□□□ -1.33
USP4-213ENST00000488520 DEFB136Q30KP8 78 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 MED28Q9H204 178 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 ZMAT5Q9UDW3 170 aaKnown RBP6.76□□□□□ -1.33
USP4-213ENST00000488520 ZNF580Q9UK33 172 aa6.76□□□□□ -1.33
USP4-213ENST00000488520 NPIPB5A8MRT5 1133 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 FAM90A26D6RGX4 464 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 L7N2F9 121 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 CCL24O00175 119 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 NXPH3O95157 252 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 SCGB1D2O95969 90 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 IFNA10P01566 189 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 IGHG4P01861 327 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 REG1AP05451 166 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 EGR2P11161 476 aaPredicted RBP6.75□□□□□ -1.33
USP4-213ENST00000488520 MYOD1P15172 320 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 PVALBP20472 110 aaPredicted RBP6.75□□□□□ -1.33
USP4-213ENST00000488520 NKX2-1P43699 371 aaPredicted RBP6.75□□□□□ -1.33
USP4-213ENST00000488520 CRIP2P52943 208 aaPredicted RBP6.75□□□□□ -1.33
USP4-213ENST00000488520 TPPP2P59282 170 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 RAB11AP62491 216 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 VAMP2P63027 116 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 SUMO1P63165 101 aaKnown RBP6.75□□□□□ -1.33
USP4-213ENST00000488520 ATP5G2Q06055 141 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 NMSQ5H8A3 153 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 C10orf55Q5SWW7 151 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 Q6ZRM9 215 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 OR10W1Q8NGF6 305 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 RAX2Q96IS3 184 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 USMG5Q96IX5 58 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 C2orf50Q96LR7 162 aa6.75□□□□□ -1.33
USP4-213ENST00000488520 CIB3Q96Q77 187 aaPredicted RBP6.75□□□□□ -1.33
USP4-213ENST00000488520 PAIP2BQ9ULR5 123 aaKnown RBP6.75□□□□□ -1.33
USP4-213ENST00000488520 A0A0G2JRQ6 117 aa6.74□□□□□ -1.33
USP4-213ENST00000488520 TEX22C9J3V5 150 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms