RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 REEP6Q96HR9 211 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CAPZA3Q96KX2 299 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 GLT1D1Q96MS3 346 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 APOL4Q9BPW4 351 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 FAAP24Q9BTP7 215 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 MED10Q9BTT4 135 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SUCNR1Q9BXA5 334 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 C1QTNF6Q9BXI9 259 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CDCA4Q9BXL8 241 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 NKX6-2Q9C056 277 aaPredicted RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 ARL6Q9H0F7 186 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 DCSTAMPQ9H295 470 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 BOLA2Q9H3K6 86 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 TUBA4BQ9H853 241 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 KCNIP2Q9NS61 270 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 TMEM106BQ9NUM4 274 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 C14orf105Q9NVL8 296 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 MED9Q9NWA0 146 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 FBXL12Q9NXK8 326 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RASL12Q9NYN1 266 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 GLS2Q9UI32 602 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SNX12Q9UMY4 172 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RPL26L1Q9UNX3 145 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 SLC35A3Q9Y2D2 325 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 LINC00588Q9Y4M8 146 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 PHLDA3Q9Y5J5 127 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 MTCH2Q9Y6C9 303 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 DDX60LQ5H9U9 1706 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 PKD1L3Q7Z443 1732 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SCN7AQ01118 1682 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RREB1Q92766 1687 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 DNMT1P26358 1616 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 ADCY10Q96PN6 1610 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ICE1Q9Y2F5 2266 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 MAST1Q9Y2H9 1570 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PZPP20742 1482 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 RALGAPBQ86X10 1494 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PCDH15Q96QU1 1955 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MGAMO43451 1857 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 A0A087WUJ7 227 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 A0A087WUU8 490 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MEIKINA0A087WXM9 373 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 A0A096LPI6 279 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TGIF2-C20orf24A0A0A6YYL0 155 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TRGV4A0A0C4DH28 118 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 A0A0J9YY10 115 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 A0A1B0GV72 72 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 A0A1B0GX12 115 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 A0A1B0GX78 115 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 A0A1W2PRE2 83 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OR6C6A6NF89 314 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FAM159BA6NKW6 160 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FAM25AB3EWG3 89 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FAM25CB3EWG5 89 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FAM25GB3EWG6 89 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 C5orf58C9J3I9 102 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 KCNK1O00180 336 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 GPR31O00270 319 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CYB5BO43169 146 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 EEF1E1O43324 174 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 PDCD6O75340 191 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 BANF1O75531 89 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PGLYRP1O75594 196 aaPredicted RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 STK16O75716 305 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PIAS1O75925 651 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 S1PR2O95136 353 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PSMG1O95456 288 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 HAND1O96004 215 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CFDP00746 253 aaPredicted RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 CA2P00918 260 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CRYGDP07320 174 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 BPGMP07738 259 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OR10J4P0C629 311 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TRAPPC2P0DI81 140 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TRAPPC2BP0DI82 140 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 C8orf88P0DMB2 117 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OR13C7P0DN81 318 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 HIST1H1EP10412 219 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 IL7P13232 177 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 ADCYAP1P18509 176 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PSMB9P28065 219 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 SRIP30626 198 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TTPAP49638 278 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 AQP5P55064 265 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TAS2R41P59536 307 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CKS1BP61024 79 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MAGOHP61326 146 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 RHOAP61586 193 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 GNG3P63215 75 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 HBG1P69891 147 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 HBG2P69892 147 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 RHOGP84095 191 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 RPL19P84098 196 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 CDK6Q00534 326 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 GNA12Q03113 381 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PLCXD2Q0VAA5 305 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MED21Q13503 144 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 RAB31Q13636 194 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 C4orf26Q17RF5 130 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 LRRC26Q2I0M4 334 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms