RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SLC35E1Q96K37 410 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 NOL4LQ96MY1 436 aaPredicted RBP14.57□□□□□ -0.08
VIM-206ENST00000487938 ZNF714Q96N38 554 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 NDUFA4L2Q9NRX3 87 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 GGTLC3B5MD39 225 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 FCN1O00602 326 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 APOA2P02652 100 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 FXYD3Q14802 87 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 LYPD2Q6UXB3 125 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 MS4A10Q96PG2 267 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 LY96Q9Y6Y9 160 aa14.57□□□□□ -0.08
VIM-206ENST00000487938 C16orf97H3BN30 126 aa14.56□□□□□ -0.08
VIM-206ENST00000487938 OR5G3P0C626 314 aa14.56□□□□□ -0.08
VIM-206ENST00000487938 RPL8P62917 257 aaKnown RBP14.56□□□□□ -0.08
VIM-206ENST00000487938 BSPH1Q075Z2 132 aa14.56□□□□□ -0.08
VIM-206ENST00000487938 OSR1Q8TAX0 266 aaPredicted RBP14.56□□□□□ -0.08
VIM-206ENST00000487938 CMTM2Q8TAZ6 248 aa14.56□□□□□ -0.08
VIM-206ENST00000487938 FLYWCH2Q96CP2 140 aaKnown RBP14.56□□□□□ -0.08
VIM-206ENST00000487938 ZNF292O60281 2723 aa14.56□□□□□ -0.08
VIM-206ENST00000487938 SLC35B1P78383 322 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 ERHP84090 104 aaKnown RBP14.55□□□□□ -0.08
VIM-206ENST00000487938 TMEM30BQ3MIR4 351 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 C10orf55Q5SWW7 151 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 MISP3Q96FF7 219 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 SLC25A33Q9BSK2 321 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 KALRNO60229 2985 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 SNURFLB1AK76 121 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 CRISP2P16562 243 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 ASPHD1Q5U4P2 390 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 OR10X1Q8NGY0 326 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 ADGRG4Q8IZF6 3080 aa14.55□□□□□ -0.08
VIM-206ENST00000487938 PPIAL4EA0A075B759 164 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 F2Z2F3 143 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 PPIAL4DF5H284 164 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 RNF224P0DH78 156 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 C8orf88P0DMB2 117 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 PPIAL4FP0DN26 164 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 TAS2R45P59539 299 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 RAB4BP61018 213 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 SELENOTP62341 195 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 OR5AN1Q8NGI8 311 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 SAP30LQ9HAJ7 183 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 PPIAL4AQ9Y536 164 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 ZGRF1Q86YA3 2104 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 DCHS1Q96JQ0 3298 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 RIF1Q5UIP0 2472 aaKnown RBP14.54□□□□□ -0.08
VIM-206ENST00000487938 DLL1O00548 723 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 THBDP07204 575 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 MGST1P10620 155 aaKnown RBP14.54□□□□□ -0.08
VIM-206ENST00000487938 NBL1P41271 181 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 TCL1AP56279 114 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 LINC00310P59036 64 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 MEF2CQ06413 473 aaPredicted RBP14.54□□□□□ -0.08
VIM-206ENST00000487938 ST6GALNAC3Q8NDV1 305 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 NDUFAF3Q9BU61 184 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 NAGKQ9UJ70 344 aa14.54□□□□□ -0.08
VIM-206ENST00000487938 TRAV9-1A0A075B6T8 112 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 TMEM178BH3BS89 294 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 SERF1AO75920 110 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 ATP5IP56385 69 aaPredicted RBP14.53□□□□□ -0.08
VIM-206ENST00000487938 WT1-ASQ06250 92 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 USF2Q15853 346 aaPredicted RBP14.53□□□□□ -0.08
VIM-206ENST00000487938 TIGITQ495A1 244 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 TMEM177Q53S58 311 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 NHLRC2Q8NBF2 726 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 LINC00479Q96M42 142 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 SLC25A2Q9BXI2 301 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 ARL2-SNX15V9GYD0 113 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 DMXL2Q8TDJ6 3036 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 PCNX1Q96RV3 2341 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 CGB1A6NKQ9 187 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 ZNF705FA8MVS1 300 aaPredicted RBP14.53□□□□□ -0.08
VIM-206ENST00000487938 ZNF705DP0CH99 300 aaPredicted RBP14.53□□□□□ -0.08
VIM-206ENST00000487938 ZNF705BP0CI00 300 aaPredicted RBP14.53□□□□□ -0.08
VIM-206ENST00000487938 RITA1Q96K30 269 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 FAM167A-AS1Q96KT0 104 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 C19orf24Q9BVV8 132 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 FNDC4Q9H6D8 234 aaPredicted RBP14.53□□□□□ -0.08
VIM-206ENST00000487938 DNAJC4Q9NNZ3 241 aa14.53□□□□□ -0.08
VIM-206ENST00000487938 POLR3KQ9Y2Y1 108 aaPredicted RBP14.53□□□□□ -0.08
VIM-206ENST00000487938 ZFHX2Q9C0A1 2572 aaPredicted RBP14.52□□□□□ -0.08
VIM-206ENST00000487938 IGLV2-8P01709 118 aa14.52□□□□□ -0.08
VIM-206ENST00000487938 BAGE3Q86Y29 109 aa14.52□□□□□ -0.08
VIM-206ENST00000487938 BAGE2Q86Y30 109 aa14.52□□□□□ -0.08
VIM-206ENST00000487938 NPIPB3Q92617 1050 aa14.52□□□□□ -0.08
VIM-206ENST00000487938 PRRG2O14669 202 aa14.52□□□□□ -0.09
VIM-206ENST00000487938 REG1AP05451 166 aa14.52□□□□□ -0.09
VIM-206ENST00000487938 PYYP10082 97 aa14.52□□□□□ -0.09
VIM-206ENST00000487938 USF1P22415 310 aaPredicted RBP14.52□□□□□ -0.09
VIM-206ENST00000487938 PNKDQ8N490 385 aa14.52□□□□□ -0.09
VIM-206ENST00000487938 OR4C13Q8NGP0 309 aa14.52□□□□□ -0.09
VIM-206ENST00000487938 CACNG8Q8WXS5 425 aa14.52□□□□□ -0.09
VIM-206ENST00000487938 SERTAD4Q9NUC0 356 aa14.52□□□□□ -0.09
VIM-206ENST00000487938 A0A1W2PRE2 83 aa14.51□□□□□ -0.09
VIM-206ENST00000487938 PSMB11A5LHX3 300 aa14.51□□□□□ -0.09
VIM-206ENST00000487938 NDUFB3O43676 98 aa14.51□□□□□ -0.09
VIM-206ENST00000487938 UBE2L3P68036 154 aaKnown RBP14.51□□□□□ -0.09
VIM-206ENST00000487938 KIAA1644Q3SXP7 199 aa14.51□□□□□ -0.09
VIM-206ENST00000487938 Q6ZWC4 215 aa14.51□□□□□ -0.09
VIM-206ENST00000487938 OR5AU1Q8NGC0 362 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms