RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 FBLN7Q53RD9 439 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 TMEM41BQ5BJD5 291 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 ZNF709Q8N972 641 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 ZNF114Q8NC26 417 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 C22orf15Q8WYQ4 148 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 VSIRQ9H7M9 311 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 NPVFQ9HCQ7 196 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 KIAA1456Q9P272 454 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 LSM4Q9Y4Z0 139 aaKnown RBP11.29□□□□□ -0.6
CUX1-209ENST00000487284 HIVEP2P31629 2446 aa11.29□□□□□ -0.6
CUX1-209ENST00000487284 TRAV1-1A0A0B4J248 108 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 SMCO3A2RU48 225 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 BTBD17A6NE02 478 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 C17orf112F2Z3M2 114 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 SOX15O60248 233 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 H2AFB1P0C5Y9 115 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 FOSL1P15407 271 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 CD24P25063 80 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 SUB1P53999 127 aaKnown RBP eCLIP11.28□□□□□ -0.6
CUX1-209ENST00000487284 HES1Q14469 280 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 HNF4GQ14541 408 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 PVRIGQ6DKI7 326 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 ACSM6Q6P461 480 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 SPSB3Q6PJ21 355 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 BCL6BQ8N143 479 aaPredicted RBP11.28□□□□□ -0.6
CUX1-209ENST00000487284 LFNGQ8NES3 379 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 RNASEH2CQ8TDP1 164 aaKnown RBP11.28□□□□□ -0.6
CUX1-209ENST00000487284 LINC00052Q96N35 136 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 P2RX4Q99571 388 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 SRSF8Q9BRL6 282 aaKnown RBP11.28□□□□□ -0.6
CUX1-209ENST00000487284 NSD1Q96L73 2696 aaPredicted RBP11.28□□□□□ -0.6
CUX1-209ENST00000487284 TEX22C9J3V5 150 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 FCN1O00602 326 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 ELLP55199 621 aaPredicted RBP11.28□□□□□ -0.6
CUX1-209ENST00000487284 CD69Q07108 199 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 PLGLAQ15195 96 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 C5orf64Q2M2E5 130 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 BPIFCQ8NFQ6 507 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 SRSF12Q8WXF0 261 aaKnown RBP11.28□□□□□ -0.6
CUX1-209ENST00000487284 CACNG8Q8WXS5 425 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 MGST2Q99735 147 aa11.28□□□□□ -0.6
CUX1-209ENST00000487284 AGPAT2O15120 278 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 HBE1P02100 147 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 MBP02144 154 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 BRS3P32247 399 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 GPX4P36969 197 aaPredicted RBP11.27□□□□□ -0.61
CUX1-209ENST00000487284 OPRK1P41145 380 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 BPIFB3P59826 476 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 RAB2AP61019 212 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 GNB1P62873 340 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 SRSF3P84103 164 aaKnown RBP11.27□□□□□ -0.61
CUX1-209ENST00000487284 ZNF726P1Q15940 193 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 FFAR4Q5NUL3 377 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 TEPPQ6URK8 271 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 MBD3L1Q8WWY6 194 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 RCC1LQ96I51 464 aaKnown RBP11.27□□□□□ -0.61
CUX1-209ENST00000487284 SCRT1Q9BWW7 348 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 GGTLC1Q9BX51 225 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 KCNIP2Q9NS61 270 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 FAM96BQ9Y3D0 163 aa11.27□□□□□ -0.61
CUX1-209ENST00000487284 MDFIC2A0A1B0GVS7 189 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 CD5P06127 495 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 FBP1P09467 338 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 FAM106CPP0CH98 169 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 AREGP15514 252 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 TMEM11P17152 192 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 AKR1C1Q04828 323 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 TMEM144Q7Z5S9 345 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 TEX29Q8N6K0 151 aa11.26□□□□□ -0.61
CUX1-209ENST00000487284 GSX1Q9H4S2 264 aaPredicted RBP11.26□□□□□ -0.61
CUX1-209ENST00000487284 REG1AP05451 166 aa11.25□□□□□ -0.61
CUX1-209ENST00000487284 SRP14P37108 136 aaKnown RBP11.25□□□□□ -0.61
CUX1-209ENST00000487284 C9orf139Q6ZV77 190 aa11.25□□□□□ -0.61
CUX1-209ENST00000487284 Q71RC1 249 aaPredicted RBP11.25□□□□□ -0.61
CUX1-209ENST00000487284 SLC16A13Q7RTY0 426 aa11.25□□□□□ -0.61
CUX1-209ENST00000487284 RPP25LQ8N5L8 163 aaKnown RBP11.25□□□□□ -0.61
CUX1-209ENST00000487284 SFT2D1Q8WV19 159 aa11.25□□□□□ -0.61
CUX1-209ENST00000487284 MEGF9Q9H1U4 602 aa11.25□□□□□ -0.61
CUX1-209ENST00000487284 TMEM218A2RU14 115 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 M6PRP20645 277 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 MFAP2P55001 183 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 CCL20P78556 96 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 RAB31Q13636 194 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 GAMTQ14353 236 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 DEFB112Q30KQ8 113 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 SSX7Q7RTT5 188 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 OR1P1Q8NH06 330 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 FNDC4Q9H6D8 234 aaPredicted RBP11.24□□□□□ -0.61
CUX1-209ENST00000487284 TMEM231Q9H6L2 316 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 TMEM160Q9NX00 188 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 PXMP4Q9Y6I8 212 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 CTXND1A0A1B0GTU2 59 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 YIF1AO95070 293 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 CNIH1O95406 144 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 HNF1AP20823 631 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 RPL29P47914 159 aaKnown RBP11.24□□□□□ -0.61
CUX1-209ENST00000487284 GUK1Q16774 197 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 ACOT6Q3I5F7 207 aaPredicted RBP11.24□□□□□ -0.61
CUX1-209ENST00000487284 OR10G4Q8NGN3 311 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 OR10G9Q8NGN4 311 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms