RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 WNK1Q9H4A3 2382 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 UNC80Q8N2C7 3258 aa11.27□□□□□ -0.6
USP42-206ENST00000479544 IGHV3-35A0A0C4DH35 117 aa11.27□□□□□ -0.6
USP42-206ENST00000479544 ZNF207O43670 478 aaKnown RBP11.27□□□□□ -0.6
USP42-206ENST00000479544 SLC25A17O43808 307 aa11.27□□□□□ -0.6
USP42-206ENST00000479544 ORM1P02763 201 aa11.27□□□□□ -0.6
USP42-206ENST00000479544 ITLN1Q8WWA0 313 aa11.27□□□□□ -0.6
USP42-206ENST00000479544 LOXL4Q96JB6 756 aa11.27□□□□□ -0.6
USP42-206ENST00000479544 MALRD1Q5VYJ5 2156 aa11.27□□□□□ -0.6
USP42-206ENST00000479544 IGKV1-39P01597 117 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 IGKV1D-39P04432 117 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 ARF6P62330 175 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 FOXL1Q12952 345 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 ZPBPQ9BS86 351 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 MEGF9Q9H1U4 602 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 UFC1Q9Y3C8 167 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 SH2D7A6NKC9 451 aaPredicted RBP11.27□□□□□ -0.61
USP42-206ENST00000479544 GPX1P07203 203 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 MLANAQ16655 118 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 RNASEH2CQ8TDP1 164 aaKnown RBP11.27□□□□□ -0.61
USP42-206ENST00000479544 GGTLC1Q9BX51 225 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 PIEZO2Q9H5I5 2752 aa11.27□□□□□ -0.61
USP42-206ENST00000479544 A0A1W2PN81 502 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 PINLYPA6NC86 204 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 H3BUT2 72 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 KLF7O75840 302 aaPredicted RBP11.26□□□□□ -0.61
USP42-206ENST00000479544 GOLT1AQ6ZVE7 132 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 KIR3DL3Q8N743 410 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 STPG4Q8N801 248 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 AAMDCQ9H7C9 122 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 DYSFO75923 2080 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 PMS2CLQ68D20 193 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 TICRRQ7Z2Z1 1910 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 CD24P25063 80 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 NTF4P34130 210 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 KIR2DS2P43631 304 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 GFRA1P56159 465 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 MAJINQ3KP22 176 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 SAPCD1Q5SSQ6 148 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 ADTRPQ96IZ2 230 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 IMMP1LQ96LU5 166 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 TNFRSF19Q9NS68 423 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 S4R3C0 116 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 TRAV9-2A0A087WT02 112 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 TRBV9A0A0B4J1U6 114 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 LINC00473A8K010 186 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 LINC00614P0C842 121 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 FOXF2Q12947 444 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 TBR1Q16650 682 aa11.26□□□□□ -0.61
USP42-206ENST00000479544 SCGB2A1O75556 95 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 RIGQ13278 110 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 PERPQ96FX8 193 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 AP5S1Q9NUS5 200 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 PCDH15Q96QU1 1955 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 RANBP2P49792 3224 aaKnown RBP11.25□□□□□ -0.61
USP42-206ENST00000479544 A0A087X0K7 114 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 K7ESF4 209 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 NDUFB3O43676 98 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 CD40P25942 277 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 CLEC7AQ9BXN2 247 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 METRNQ9UJH8 293 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 NCBP2LA6PVI3 153 aaKnown RBP11.25□□□□□ -0.61
USP42-206ENST00000479544 HYPMO75409 117 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 SCGB1C2P0DMR2 95 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 PSG1P11464 419 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 FXYD7P58549 80 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 ZNF497Q6ZNH5 498 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 PPP1R32Q7Z5V6 425 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 ARL6IP6Q8N6S5 226 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 THYN1Q9P016 225 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 CDC42EP3Q9UKI2 254 aa11.25□□□□□ -0.61
USP42-206ENST00000479544 IGLV3-12A0A075B6K2 115 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 STAG3L2P0CL84 134 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 STAG3L3P0CL85 134 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 TSPOP30536 169 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 SFTA2Q6UW10 78 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 LINC00305Q7Z4B0 112 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 TMEM210A6NLX4 147 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 ZNF785A8K8V0 405 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 TMEM42Q69YG0 159 aa11.24□□□□□ -0.61
USP42-206ENST00000479544 COL4A4P53420 1690 aaPredicted RBP11.24□□□□□ -0.61
USP42-206ENST00000479544 HBBP68871 147 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 OR10W1Q8NGF6 305 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 MGST2Q99735 147 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 MRPL14Q6P1L8 145 aaKnown RBP11.23□□□□□ -0.61
USP42-206ENST00000479544 IGKV3-7A0A075B6H7 116 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 APOHP02749 345 aaPredicted RBP11.23□□□□□ -0.61
USP42-206ENST00000479544 FABP2P12104 132 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 PRRX1P54821 245 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 IGHV3OR16-8A0A075B7F1 116 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 CGB1A6NKQ9 187 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 LGALS4P56470 323 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 UBE2V1Q13404 147 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 TPTE2P1Q5T6R2 138 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 ACP7Q6ZNF0 438 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 RPEQ96AT9 228 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 NDFIP1Q9BT67 221 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 RNF7Q9UBF6 113 aa11.23□□□□□ -0.61
USP42-206ENST00000479544 PEF1Q9UBV8 284 aaKnown RBP11.23□□□□□ -0.61
USP42-206ENST00000479544 LRRC10Q5BKY1 277 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms