RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TXN2Q99757 166 aa13.91□□□□□ -0.18
CCDC88B-206ENST00000473405 EXTL2Q9UBQ6 330 aa13.91□□□□□ -0.18
CCDC88B-206ENST00000473405 IGHV3-49A0A0A0MS15 119 aa13.9□□□□□ -0.18
CCDC88B-206ENST00000473405 A0A0B4J293 547 aa13.9□□□□□ -0.18
CCDC88B-206ENST00000473405 PGAM2P15259 253 aa13.9□□□□□ -0.18
CCDC88B-206ENST00000473405 TBPP20226 339 aa13.9□□□□□ -0.18
CCDC88B-206ENST00000473405 TMEM116Q8NCL8 245 aa13.9□□□□□ -0.18
CCDC88B-206ENST00000473405 RHPN1-AS1Q9BWJ2 59 aa13.9□□□□□ -0.18
CCDC88B-206ENST00000473405 MTFP1Q9UDX5 166 aa13.9□□□□□ -0.18
CCDC88B-206ENST00000473405 KMT2AQ03164 3969 aa13.9□□□□□ -0.19
CCDC88B-206ENST00000473405 KIR2DL5BA0A0G2JN68 375 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 KIR2DL5BA0A0G2JPC4 375 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 A0A0J9YWU9 116 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 SPRY2O43597 315 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 YIF1AO95070 293 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 ZNF182P17025 639 aaPredicted RBP13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 PPP5CP53041 499 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 TNFRSF9Q07011 255 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 KIR2DL5AQ8N109 375 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 KIR2DL5BQ8NHK3 375 aa13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 PINX1Q96BK5 328 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-206ENST00000473405 INS-IGF2F8WCM5 200 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 UBE2CO00762 179 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 ST8SIA3O43173 380 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 CD74P04233 296 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 BMI1P35226 326 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 ERHP84090 104 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 ZNF124Q15973 351 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 FAM90A2PQ658T7 463 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 PVRIGQ6DKI7 326 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 LYG2Q86SG7 212 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 APRG1Q8IVJ8 170 aa13.88□□□□□ -0.19
CCDC88B-206ENST00000473405 C3orf85A0A1B0GTC6 90 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 GNG7O60262 68 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 RPL35AP18077 110 aaKnown RBP13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 AKR1C2P52895 323 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 GPR107Q5VW38 600 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 STPG3Q8N7X2 389 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 OR13C8Q8NGS7 320 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 RNF183Q96D59 192 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 GALNT14Q96FL9 552 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 MIXL1Q9H2W2 232 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 ZFAND3Q9H8U3 227 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 MAP6D1Q9H9H5 199 aa13.87□□□□□ -0.19
CCDC88B-206ENST00000473405 IGHV3OR16-13A0A075B7E8 117 aa13.86□□□□□ -0.19
CCDC88B-206ENST00000473405 TRAV14DV4A0A0A6YYC5 116 aa13.86□□□□□ -0.19
CCDC88B-206ENST00000473405 IGHV3-74A0A0B4J1X5 117 aa13.86□□□□□ -0.19
CCDC88B-206ENST00000473405 A0A0G2JRQ6 117 aa13.86□□□□□ -0.19
CCDC88B-206ENST00000473405 SP6Q3SY56 376 aa13.86□□□□□ -0.19
CCDC88B-206ENST00000473405 TOMM20LQ6UXN7 152 aa13.86□□□□□ -0.19
CCDC88B-206ENST00000473405 SLC35G3Q8N808 338 aa13.86□□□□□ -0.19
CCDC88B-206ENST00000473405 TERB2Q8NHR7 220 aa13.86□□□□□ -0.19
CCDC88B-206ENST00000473405 IGKV3-7A0A075B6H7 116 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 APOHP02749 345 aaPredicted RBP13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 RNASE2P10153 161 aaKnown RBP13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 UCP1P25874 307 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 SNCAP37840 140 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 TFPI2P48307 235 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 PMS2P11Q13670 270 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 TRIM16LQ309B1 348 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 TMEM229BQ8NBD8 167 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 MARCH1Q8TCQ1 289 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 ST8SIA2Q92186 375 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 VSIRQ9H7M9 311 aa13.85□□□□□ -0.19
CCDC88B-206ENST00000473405 CXorf65A6NEN9 183 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 IFNA17P01571 189 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 NPBWR1P48145 328 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 TAS2R19P59542 299 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 SCGB2B2Q4G0G5 96 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 FAAP20Q6NZ36 180 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 STEAP1BQ6NZ63 245 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 LILRB2Q8N423 598 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 GBGT1Q8N5D6 347 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 CCDC71LQ8N9Z2 235 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 DUSP18Q8NEJ0 188 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 ZFAND1Q8TCF1 268 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 C15orf40Q8WUR7 153 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 LINC00476Q8WZB0 136 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 GINS3Q9BRX5 216 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 MRPL36Q9P0J6 103 aaKnown RBP13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 COPZ2Q9P299 210 aa13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 PUS1Q9Y606 427 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC88B-206ENST00000473405 A0A1B0GU03 582 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 GABARAPH6UMI1 98 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 ATG12O94817 140 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 RAB3DO95716 219 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 ATF4P18848 351 aaPredicted RBP13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 ETV6P41212 452 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 SPCS2Q15005 226 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 BSXQ3C1V8 233 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 ZNF600Q6ZNG1 722 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 Q6ZRM9 215 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 TCF24Q7RTU0 167 aa13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 FNDC4Q9H6D8 234 aaPredicted RBP13.83□□□□□ -0.2
CCDC88B-206ENST00000473405 NUPR2A6NF83 97 aa13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 TMEM50AO95807 157 aa13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 ALDH3B2P48448 385 aa13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 HOXA1P49639 335 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 SSBP1Q04837 148 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 AARDQ4LEZ3 155 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms