RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 C15orf62A8K5M9 175 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 CHEK1O14757 476 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 APOHP02749 345 aaPredicted RBP12.35□□□□□ -0.43
USP40-212ENST00000473191 CD74P04233 296 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 RPL35AP18077 110 aaKnown RBP12.35□□□□□ -0.43
USP40-212ENST00000473191 MFAP4P55083 255 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 MLANAQ16655 118 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 SCGB2B2Q4G0G5 96 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 Q6ZRM9 215 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 APRG1Q8IVJ8 170 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 LILRB2Q8N423 598 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 ARRDC1Q8N5I2 433 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 TMEM229BQ8NBD8 167 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 AP3S1Q92572 193 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 OR10C1Q96KK4 312 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 ATP6V0BQ99437 205 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 RHPN1-AS1Q9BWJ2 59 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 NXF2Q9GZY0 626 aaKnown RBP12.35□□□□□ -0.43
USP40-212ENST00000473191 ALMS1Q8TCU4 4167 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 IGHV7-4-1A0A0J9YVY3 117 aa12.34□□□□□ -0.43
USP40-212ENST00000473191 NUPL2O15504 423 aaKnown RBP12.34□□□□□ -0.43
USP40-212ENST00000473191 YIF1AO95070 293 aa12.34□□□□□ -0.43
USP40-212ENST00000473191 ETV6P41212 452 aa12.34□□□□□ -0.43
USP40-212ENST00000473191 TFPI2P48307 235 aa12.34□□□□□ -0.43
USP40-212ENST00000473191 DEFB135Q30KP9 77 aa12.34□□□□□ -0.43
USP40-212ENST00000473191 LHFPL5Q8TAF8 219 aa12.34□□□□□ -0.43
USP40-212ENST00000473191 ZNF486Q96H40 463 aaPredicted RBP12.34□□□□□ -0.43
USP40-212ENST00000473191 IGHV3-66A0A0C4DH42 116 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 RGS5O15539 181 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 RAB3DO95716 219 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 FCGR2BP31994 310 aaPredicted RBP12.33□□□□□ -0.44
USP40-212ENST00000473191 AKR1C2P52895 323 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 ERHP84090 104 aaKnown RBP12.33□□□□□ -0.44
USP40-212ENST00000473191 FAM90A2PQ658T7 463 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 STEAP1BQ6NZ63 245 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 TOMM20LQ6UXN7 152 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 TMEM116Q8NCL8 245 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 TERB2Q8NHR7 220 aa12.33□□□□□ -0.44
USP40-212ENST00000473191 RTBDNQ9BSG5 229 aaPredicted RBP12.33□□□□□ -0.44
USP40-212ENST00000473191 MRPS26Q9BYN8 205 aaKnown RBP12.33□□□□□ -0.44
USP40-212ENST00000473191 A0A0J9YWU9 116 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 GABARAPH6UMI1 98 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 IFNA17P01571 189 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 OR5AC1P0C628 307 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 RNASE2P10153 161 aaKnown RBP12.32□□□□□ -0.44
USP40-212ENST00000473191 UCP1P25874 307 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 TAS2R19P59542 299 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 RELQ04864 619 aaPredicted RBP12.32□□□□□ -0.44
USP40-212ENST00000473191 TRIM16LQ309B1 348 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 PVRIGQ6DKI7 326 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 LAMTOR1Q6IAA8 161 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 GPR141Q7Z602 305 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 GBGT1Q8N5D6 347 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 FNDC4Q9H6D8 234 aaPredicted RBP12.32□□□□□ -0.44
USP40-212ENST00000473191 COPZ2Q9P299 210 aa12.32□□□□□ -0.44
USP40-212ENST00000473191 A0A1B0GU03 582 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 GNG7O60262 68 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 TBPP20226 339 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 CLVS1Q8IUQ0 354 aaPredicted RBP12.31□□□□□ -0.44
USP40-212ENST00000473191 SLC35G3Q8N808 338 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 IL17DQ8TAD2 202 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 ST8SIA2Q92186 375 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 TXN2Q99757 166 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 ZFAND3Q9H8U3 227 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 PRR13Q9NZ81 148 aa12.31□□□□□ -0.44
USP40-212ENST00000473191 TRAV14DV4A0A0A6YYC5 116 aa12.3□□□□□ -0.44
USP40-212ENST00000473191 SPRY2O43597 315 aa12.3□□□□□ -0.44
USP40-212ENST00000473191 PMS2P11Q13670 270 aa12.3□□□□□ -0.44
USP40-212ENST00000473191 FAM24BQ8N5W8 94 aa12.3□□□□□ -0.44
USP40-212ENST00000473191 OR4C16Q8NGL9 310 aa12.3□□□□□ -0.44
USP40-212ENST00000473191 ZFAND1Q8TCF1 268 aa12.3□□□□□ -0.44
USP40-212ENST00000473191 GLYATL2Q8WU03 294 aa12.3□□□□□ -0.44
USP40-212ENST00000473191 PUS1Q9Y606 427 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP40-212ENST00000473191 OR4C46A6NHA9 309 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 INS-IGF2F8WCM5 200 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 NXPH3O95157 252 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 TMEM50AO95807 157 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 HOXA1P49639 335 aaPredicted RBP12.29□□□□□ -0.44
USP40-212ENST00000473191 LYG2Q86SG7 212 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 WFDC3Q8IUB2 231 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 CCDC71LQ8N9Z2 235 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 DYNC2LI1Q8TCX1 351 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 SMIM4Q8WVI0 70 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 MAP6D1Q9H9H5 199 aa12.29□□□□□ -0.44
USP40-212ENST00000473191 CDS2O95674 445 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 SNCAP37840 140 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 APOC4P55056 127 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 IL18Q14116 193 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 MEF2DQ14814 521 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 Q6ZWC4 215 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 TCF24Q7RTU0 167 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 SELENOHQ8IZQ5 122 aaKnown RBP12.28□□□□□ -0.44
USP40-212ENST00000473191 DUSP18Q8NEJ0 188 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 GPR146Q96CH1 333 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 TMEM222Q9H0R3 208 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 VSIRQ9H7M9 311 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 NAA60Q9H7X0 242 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 GPR132Q9UNW8 380 aa12.28□□□□□ -0.44
USP40-212ENST00000473191 TEX13DA0A0J9YY54 714 aaPredicted RBP12.27□□□□□ -0.45
USP40-212ENST00000473191 DFFBO76075 338 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms