RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 RHOBP62745 196 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 MAPK1IP1LQ8NDC0 245 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 IMMP2LQ96T52 175 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 C11orf1Q9H5F2 150 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 TUBG2Q9NRH3 451 aa11.18□□□□□ -0.62
CCDC88A-211ENST00000471947 PPOXP50336 477 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 ECSCRQ19T08 205 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 SGMS2Q8NHU3 365 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 HIVEP2P31629 2446 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 A0A1B0GUS0 222 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 UPK2O00526 184 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 FAM90A2PQ658T7 463 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 C1QL4Q86Z23 238 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 OR4C13Q8NGP0 309 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 NRGNQ92686 78 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 ADTRPQ96IZ2 230 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 WASHC3Q9Y3C0 194 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 GRIFINA4D1Z8 144 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 F2RL2O00254 374 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 RPL27AP46776 148 aaKnown RBP11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 ZNF114Q8NC26 417 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 MS4A10Q96PG2 267 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 NAT8Q9UHE5 227 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 WDR83OSQ9Y284 106 aa11.17□□□□□ -0.62
CCDC88A-211ENST00000471947 IGHV3-66A0A0C4DH42 116 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 TIMM23O14925 209 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 IGHV1-8P0DP01 117 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 GNG5P63218 68 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 HEPN1Q6WQI6 88 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 PQLC2Q6ZP29 291 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 SLC25A33Q9BSK2 321 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 CFAP46Q8IYW2 2715 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 ZNF98A6NK75 572 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 EFNB3Q15768 340 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 TMUB1Q9BVT8 246 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 PRRX1P54821 245 aa11.16□□□□□ -0.62
CCDC88A-211ENST00000471947 H0YJW9 148 aa11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 TRGC1P0CF51 173 aa11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 CD33P20138 364 aa11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 CA7P43166 264 aa11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 CAMPP49913 170 aa11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 RPL23P62829 140 aaKnown RBP11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 PRSS8Q16651 343 aa11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 SLC25A48Q6ZT89 311 aaKnown RBP11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 FAM222BQ8WU58 562 aa11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 PSMG3Q9BT73 122 aaPredicted RBP11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 MRPL41Q8IXM3 137 aaKnown RBP11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 C1orf174Q8IYL3 243 aa11.15□□□□□ -0.62
CCDC88A-211ENST00000471947 GCHFRP30047 84 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 KIR2DS2P43631 304 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 ELOBQ15370 118 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 TMEM170AQ8WVE7 144 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 TMEM133Q9H2Q1 129 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 IGHV2-26A0A0B4J1V2 119 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 MUC21A0A0G2JKD1 596 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 MUC21A0A140T8X8 626 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 SIAH2O43255 324 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 SLC25A5P05141 298 aaKnown RBP11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 LY6EQ16553 131 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 MUC21Q5SSG8 566 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 SUB1P53999 127 aaKnown RBP eCLIP11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 CLEC7AQ9BXN2 247 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 RNASE7Q9H1E1 156 aaKnown RBP11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 SDF2L1Q9HCN8 221 aa11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 YTHDF2Q9Y5A9 579 aaKnown RBP11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 TET2Q6N021 2002 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-211ENST00000471947 CUBNO60494 3623 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 ZNF207O43670 478 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 LY86O95711 162 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 CTRB1P17538 263 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 ADORA2A-AS1P86434 159 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 MORN5Q5VZ52 161 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 CTRB2Q6GPI1 263 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 COA4Q9NYJ1 87 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 DOPEY1Q5JWR5 2465 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 TMSB15BA0A087X1C1 80 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 C22orf46C9J442 243 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 J3KRW8 73 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 WT1-ASQ06250 92 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 NUP37Q8NFH4 326 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 LOC105371242A0A075B767 164 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 H0Y8G0 127 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 AP4M1O00189 453 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 VDAC2P45880 294 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 IER3P46695 156 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 Q56UQ5 140 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 ZNF439Q8NDP4 499 aa11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 PRRC2AP48634 2157 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-211ENST00000471947 PHOX2AO14813 284 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 GNG4P50150 75 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 NUBP1P53384 320 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 TIGITQ495A1 244 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 OR2T10Q8NGZ9 312 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 MRPL36Q9P0J6 103 aaKnown RBP11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 XKRY2A2RUG3 117 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 FCN3O75636 299 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 CBLN1P23435 193 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 MEOX2P50222 304 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 C10orf113Q5VZT2 155 aa11.12□□□□□ -0.63
CCDC88A-211ENST00000471947 UNQ6494/PRO21346Q6UXR6 183 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms