RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TRBV12-3P01733 135 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 HIST1H1BP16401 226 aaKnown RBP11.43□□□□□ -0.58
COL9A3-209ENST00000469852 PAX9P55771 341 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 RAB32Q13637 225 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 EXOSC2Q13868 293 aaKnown RBP11.43□□□□□ -0.58
COL9A3-209ENST00000469852 ETV3LQ6ZN32 361 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 FAM223AQ8IWN6 122 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 SLC24A4Q8NFF2 622 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 C4orf3Q8WVX3 66 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 MISP3Q96FF7 219 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 OR4C12Q96R67 309 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 MED28Q9H204 178 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 HIPK2Q9H2X6 1198 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 CACFD1Q9UGQ2 172 aa11.43□□□□□ -0.58
COL9A3-209ENST00000469852 LSM5Q9Y4Y9 91 aaKnown RBP11.43□□□□□ -0.58
COL9A3-209ENST00000469852 C15orf62A8K5M9 175 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 H3BP45 60 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 I3L2K1 104 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 WIPF1O43516 503 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 MED6O75586 246 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 IGHV3-48P01763 117 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 LGALS1P09382 135 aaKnown RBP11.42□□□□□ -0.58
COL9A3-209ENST00000469852 NPY1RP25929 384 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 HTR2BP41595 481 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 RRAS2P62070 204 aaPredicted RBP11.42□□□□□ -0.58
COL9A3-209ENST00000469852 ATP5G2Q06055 141 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 MLANAQ16655 118 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 C2orf83Q53S99 150 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 RAX2Q96IS3 184 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 USMG5Q96IX5 58 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 CCDC140Q96MF4 163 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 C11orf1Q9H5F2 150 aa11.42□□□□□ -0.58
COL9A3-209ENST00000469852 FNDC4Q9H6D8 234 aaPredicted RBP11.42□□□□□ -0.58
COL9A3-209ENST00000469852 A0A0G2JLM5 398 aa11.41□□□□□ -0.58
COL9A3-209ENST00000469852 ANKRD34BA5PLL1 514 aa11.41□□□□□ -0.58
COL9A3-209ENST00000469852 MT-CO2P00403 227 aa11.41□□□□□ -0.58
COL9A3-209ENST00000469852 IFNA10P01566 189 aa11.41□□□□□ -0.58
COL9A3-209ENST00000469852 S100A10P60903 97 aa11.41□□□□□ -0.58
COL9A3-209ENST00000469852 ZNF343Q6P1L6 599 aa11.41□□□□□ -0.58
COL9A3-209ENST00000469852 Q6ZNX1 250 aa11.41□□□□□ -0.58
COL9A3-209ENST00000469852 PINX1Q96BK5 328 aaKnown RBP11.41□□□□□ -0.58
COL9A3-209ENST00000469852 NMES1Q9C002 83 aa11.41□□□□□ -0.58
COL9A3-209ENST00000469852 MRPL36Q9P0J6 103 aaKnown RBP11.41□□□□□ -0.58
COL9A3-209ENST00000469852 IGHV4OR15-8A0A075B7B6 117 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 A0A087WW49 117 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 F8W735 103 aaPredicted RBP11.4□□□□□ -0.58
COL9A3-209ENST00000469852 H0YIZ8 118 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 CCNKO75909 580 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 SUB1P53999 127 aaKnown RBP eCLIP11.4□□□□□ -0.58
COL9A3-209ENST00000469852 RUNX1Q01196 453 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 LRRC37A5PQ49AS3 106 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 SPANXN5Q5MJ07 72 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 OR1L6Q8NGR2 347 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 ZNF502Q8TBZ5 544 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 SCARB1Q8WTV0 552 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 CIB3Q96Q77 187 aaPredicted RBP11.4□□□□□ -0.58
COL9A3-209ENST00000469852 PSENENQ9NZ42 101 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 U3KQ87 197 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 WNK1Q9H4A3 2382 aa11.4□□□□□ -0.58
COL9A3-209ENST00000469852 PPP5D1E7EU14 171 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 CLEC19AQ6UXS0 136 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 OR11H1Q8NG94 326 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 VN1R17PQ8TDU5 208 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 CHAC2Q8WUX2 184 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 PPP1R1CQ8WVI7 109 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 EEF1AKMT3Q96AZ1 226 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 SMIM8Q96KF7 97 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 ZC4H2Q9NQZ6 224 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 OR5AC2Q9NZP5 309 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 THYN1Q9P016 225 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 PAIP2BQ9ULR5 123 aaKnown RBP11.39□□□□□ -0.59
COL9A3-209ENST00000469852 PKD1L1Q8TDX9 2849 aa11.39□□□□□ -0.59
COL9A3-209ENST00000469852 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.38□□□□□ -0.59
COL9A3-209ENST00000469852 PRSS46E5RG02 174 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 M0QZ24 198 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 CCL24O00175 119 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 BMPR1BO00238 502 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 CYB5BO43169 146 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 FHL3Q13643 280 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 OR1N2Q8NGR9 330 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 CXorf58Q96LI9 332 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 RAB40CQ96S21 281 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 ZNF436Q9C0F3 470 aaPredicted RBP11.38□□□□□ -0.59
COL9A3-209ENST00000469852 C21orf62Q9NYP8 219 aa11.38□□□□□ -0.59
COL9A3-209ENST00000469852 PEF1Q9UBV8 284 aaKnown RBP11.38□□□□□ -0.59
COL9A3-209ENST00000469852 MEGF8Q7Z7M0 2845 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 PMS2P5A8MQ11 134 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 DEDDO75618 318 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 OR8U8P0C7N1 319 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 GPR183P32249 361 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 OPRK1P41145 380 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 SLURP1P55000 103 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 CYCSP99999 105 aaKnown RBP11.37□□□□□ -0.59
COL9A3-209ENST00000469852 TMEM14EPQ6UXP3 125 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 RNASEH2CQ8TDP1 164 aaKnown RBP11.37□□□□□ -0.59
COL9A3-209ENST00000469852 ZNF414Q96IQ9 312 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 RNF126Q9BV68 326 aa11.37□□□□□ -0.59
COL9A3-209ENST00000469852 STRAPQ9Y3F4 350 aaKnown RBP11.37□□□□□ -0.59
COL9A3-209ENST00000469852 TRAV14DV4A0A0A6YYC5 116 aa11.36□□□□□ -0.59
COL9A3-209ENST00000469852 TRBV7-1A0A0A6YYK4 115 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms