RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 HSF4Q9ULV5 492 aa3.68□□□□□ -1.82
PTPN4-209ENST00000469511 SPATA2Q9UM82 520 aa3.68□□□□□ -1.82
PTPN4-209ENST00000469511 RBMX2Q9Y388 322 aaKnown RBP3.68□□□□□ -1.82
PTPN4-209ENST00000469511 LINC00588Q9Y4M8 146 aa3.68□□□□□ -1.82
PTPN4-209ENST00000469511 A0A075B6Q4 140 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 IGHV3OR16-12A0A075B7B8 117 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 TRAV14DV4A0A0A6YYC5 116 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 TEX50A0A1B0GTY4 177 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 DNASE2O00115 360 aaPredicted RBP3.67□□□□□ -1.82
PTPN4-209ENST00000469511 UPK2O00526 184 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 GYG2O15488 501 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 ST8SIA3O43173 380 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 TNFSF12O43508 249 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 CREBL2O60519 120 aaPredicted RBP3.67□□□□□ -1.82
PTPN4-209ENST00000469511 DHFRP00374 187 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 SERPINE2P07093 398 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 UBBP0CG47 229 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 SPART-AS1P0CW21 52 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 PTHLHP12272 177 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 HOXB6P17509 224 aaKnown RBP3.67□□□□□ -1.82
PTPN4-209ENST00000469511 NPY1RP25929 384 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 SERPINB10P48595 397 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 BAK1Q16611 211 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 ANXA2RQ3ZCQ2 193 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 ACSM3Q53FZ2 586 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 RBM48Q5RL73 367 aaKnown RBP3.67□□□□□ -1.82
PTPN4-209ENST00000469511 LCE1DQ5T752 114 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 TOMM20LQ6UXN7 152 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 TMPRSS11AQ6ZMR5 421 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 CENPSQ8N2Z9 138 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 NKAIN3Q8N8D7 197 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 GDPD1Q8N9F7 314 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 TCTEX1D2Q8WW35 142 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 FRZBQ92765 325 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 DGCR14Q96DF8 476 aaKnown RBP3.67□□□□□ -1.82
PTPN4-209ENST00000469511 RAB40CQ96S21 281 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 GINS4Q9BRT9 223 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 HRASLSQ9HDD0 168 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 ARGLU1Q9NWB6 273 aaPredicted RBP3.67□□□□□ -1.82
PTPN4-209ENST00000469511 TAS2R8Q9NYW2 309 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 MGAT4AQ9UM21 535 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 NSG2Q9Y328 171 aa3.67□□□□□ -1.82
PTPN4-209ENST00000469511 AK6Q9Y3D8 172 aaKnown RBP3.67□□□□□ -1.82
PTPN4-209ENST00000469511 A0A1B0GU03 582 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 LOC100130705A0A1B0GUX0 176 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 SNTNA6NMZ2 147 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 ZNF705FA8MVS1 300 aaPredicted RBP3.66□□□□□ -1.82
PTPN4-209ENST00000469511 HLA-DQB1P01920 261 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 CDK1P06493 297 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 ZNF705DP0CH99 300 aaPredicted RBP3.66□□□□□ -1.82
PTPN4-209ENST00000469511 ZNF705BP0CI00 300 aaPredicted RBP3.66□□□□□ -1.82
PTPN4-209ENST00000469511 SPP1P10451 314 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 GNB3P16520 340 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 DCKP27707 260 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 TAS2R43P59537 309 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 C2orf76Q3KRA6 126 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 GDF5OSQ5U4N7 250 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 LAIR2Q6ISS4 152 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 SPSB3Q6PJ21 355 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 ZNF66Q6ZN08 573 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 ZNF705AQ6ZN79 300 aaPredicted RBP3.66□□□□□ -1.82
PTPN4-209ENST00000469511 CBR4Q8N4T8 237 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 STXBP6Q8NFX7 210 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 OR4S2Q8NH73 311 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 DCANP1Q8TF63 244 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 PYDC1Q8WXC3 89 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 SLC25A46Q96AG3 418 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 Q96MT0 163 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 C17orf77Q96MU5 243 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 CMTM3Q96MX0 182 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 UHRF2Q96PU4 802 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 NIPSNAP3BQ9BS92 247 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 ATG101Q9BSB4 218 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 TM2D2Q9BX73 214 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 NXF2Q9GZY0 626 aaKnown RBP3.66□□□□□ -1.82
PTPN4-209ENST00000469511 CCL28Q9NRJ3 127 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 BET1LQ9NYM9 111 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 MRPL36Q9P0J6 103 aaKnown RBP3.66□□□□□ -1.82
PTPN4-209ENST00000469511 DIMT1Q9UNQ2 313 aaKnown RBP3.66□□□□□ -1.82
PTPN4-209ENST00000469511 PRELID3BQ9Y3B1 194 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 OR2W1Q9Y3N9 320 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 TMED3Q9Y3Q3 217 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 TNFRSF18Q9Y5U5 241 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 COX11Q9Y6N1 276 aa3.66□□□□□ -1.82
PTPN4-209ENST00000469511 TMEM272A0A1B0GTI8 110 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 RPS10-NUDT3A0A1W2PQS6 291 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 I3L2K1 104 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 MFNGO00587 321 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 NUDT3O95989 172 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 IGKV3-20P01619 116 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 PPP5CP53041 499 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 PAFAH1B2P68402 229 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 FCN2Q15485 313 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 PSMG4Q5JS54 123 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 LIPKQ5VXJ0 399 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 Q6ZRN7 208 aaPredicted RBP3.65□□□□□ -1.83
PTPN4-209ENST00000469511 SPAG16Q8N0X2 631 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 DUSP18Q8NEJ0 188 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 VSTM2AQ8TAG5 236 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 TMEM80Q96HE8 168 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms