RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 RBMY1DP0C7P1 496 aaKnown RBP5.42□□□□□ -1.54
USP54-208ENST00000461520 PTHLHP12272 177 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 EDN2P20800 178 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 OR2B8PP59922 312 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 GUCA2BQ16661 112 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 ANKRD55Q3KP44 614 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 ZNF57Q68EA5 555 aaPredicted RBP5.42□□□□□ -1.54
USP54-208ENST00000461520 THOC7Q6I9Y2 204 aaKnown RBP5.42□□□□□ -1.54
USP54-208ENST00000461520 KRTAP5-11Q6L8G4 156 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 ZNF818PQ6ZRF7 136 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 CROCCP3Q8IVE0 287 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 MARC2Q969Z3 335 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 COMMD5Q9GZQ3 224 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 SRD5A3Q9H8P0 318 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 PLEKHA2Q9HB19 425 aa5.42□□□□□ -1.54
USP54-208ENST00000461520 ALMS1Q8TCU4 4167 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 TRAV25A0A0B4J276 109 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 IGLC7A0M8Q6 106 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 MFSD2BA6NFX1 497 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 CLEC3BP05452 202 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 C8orf88P0DMB2 117 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 MYOD1P15172 320 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 PTBP1P26599 531 aaKnown RBP eCLIP5.41□□□□□ -1.54
USP54-208ENST00000461520 GNRHRP30968 328 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 FXYD4P59646 89 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 HERV-K104P61576 105 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 NEDD8Q15843 81 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 KCTD21Q4G0X4 260 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 AADACL3Q5VUY0 350 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 PLET1Q6UQ28 207 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 DHRS11Q6UWP2 260 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 HSD17B13Q7Z5P4 300 aaPredicted RBP5.41□□□□□ -1.54
USP54-208ENST00000461520 TMEM61Q8N0U2 210 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 UXS1Q8NBZ7 420 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 DMBX1Q8NFW5 382 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 OR52B4Q8NGK2 314 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 OR51H1Q8NH63 302 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 ZNF502Q8TBZ5 544 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 CACNG8Q8WXS5 425 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 S100A16Q96FQ6 103 aaKnown RBP5.41□□□□□ -1.54
USP54-208ENST00000461520 WFDC10AQ9H1F0 79 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 RETNQ9HD89 108 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 IFT46Q9NQC8 304 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 COMMD9Q9P000 198 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 MRPL27Q9P0M9 148 aaKnown RBP5.41□□□□□ -1.54
USP54-208ENST00000461520 MLXQ9UH92 298 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 S4R3C0 116 aa5.41□□□□□ -1.54
USP54-208ENST00000461520 TRAV3A0A0B4J244 114 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 MEIS3P1A6NDR6 274 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 S1PR2O95136 353 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 FCER2P06734 321 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 F2RP25116 425 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 GPR183P32249 361 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 TAS2R46P59540 309 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 ERVK-16P61578 105 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 UBE2NLQ5JXB2 153 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 BTNL8Q6UX41 500 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 UNQ9165/PRO28630Q6UXU0 137 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 RBPMS2Q6ZRY4 209 aaKnown RBP5.4□□□□□ -1.54
USP54-208ENST00000461520 TMEM17Q86X19 198 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 CMTM1Q8IZ96 169 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 GDPD1Q8N9F7 314 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 VN1R17PQ8TDU5 208 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 MOB3AQ96BX8 217 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 ATP6V0BQ99437 205 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 FAM110AQ9BQ89 295 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 ZNF2Q9BSG1 426 aaPredicted RBP5.4□□□□□ -1.54
USP54-208ENST00000461520 ZNF436Q9C0F3 470 aaPredicted RBP5.4□□□□□ -1.54
USP54-208ENST00000461520 EHFQ9NZC4 300 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 ANAPC10Q9UM13 185 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 UFC1Q9Y3C8 167 aa5.4□□□□□ -1.54
USP54-208ENST00000461520 TNCP24821 2201 aa5.4□□□□□ -1.55
USP54-208ENST00000461520 LOC102724200A0A096LPH7 203 aaPredicted RBP5.39□□□□□ -1.55
USP54-208ENST00000461520 TEX50A0A1B0GTY4 177 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 TGOLN2O43493 480 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 PGLYRP1O75594 196 aaPredicted RBP5.39□□□□□ -1.55
USP54-208ENST00000461520 RLN1P04808 185 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 SERPINE2P07093 398 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 TRAPPC2P0DI81 140 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 TRAPPC2BP0DI82 140 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 OR13C7P0DN81 318 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 TAS2R20P59543 309 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 WT1-ASQ06250 92 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 TMEM69Q5SWH9 247 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 SLC25A24Q6NUK1 477 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 SPSB3Q6PJ21 355 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 OR10W1Q8NGF6 305 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 OR1L6Q8NGR2 347 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 OR1L8Q8NGR8 309 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 OR5H2Q8NGV7 314 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 OR6F1Q8NGZ6 308 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 TMEM190Q8WZ59 177 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 LSM10Q969L4 123 aaKnown RBP5.39□□□□□ -1.55
USP54-208ENST00000461520 DGCR14Q96DF8 476 aaKnown RBP5.39□□□□□ -1.55
USP54-208ENST00000461520 BSCL2Q96G97 398 aaPredicted RBP5.39□□□□□ -1.55
USP54-208ENST00000461520 GGTLC1Q9BX51 225 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 C5orf66Q9H5L9 145 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 NDUFA4L2Q9NRX3 87 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 FKBP11Q9NYL4 201 aa5.39□□□□□ -1.55
USP54-208ENST00000461520 F11RQ9Y624 299 aaKnown RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms