RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 RBM38Q9H0Z9 239 aaKnown RBP17.35■□□□□ 0.37
PTPN4-208ENST00000460289 KCNIP3Q9Y2W7 256 aa17.35■□□□□ 0.37
PTPN4-208ENST00000460289 I3L2K1 104 aa17.34■□□□□ 0.37
PTPN4-208ENST00000460289 FAUP35544 74 aaKnown RBP17.34■□□□□ 0.37
PTPN4-208ENST00000460289 SUB1P53999 127 aaKnown RBP eCLIP17.34■□□□□ 0.37
PTPN4-208ENST00000460289 MFAP4P55083 255 aa17.34■□□□□ 0.37
PTPN4-208ENST00000460289 AP3S2P59780 193 aa17.34■□□□□ 0.37
PTPN4-208ENST00000460289 TMEM190Q8WZ59 177 aa17.34■□□□□ 0.37
PTPN4-208ENST00000460289 RBPMSQ93062 196 aaKnown RBP17.34■□□□□ 0.37
PTPN4-208ENST00000460289 NEURL2Q9BR09 285 aa17.34■□□□□ 0.37
PTPN4-208ENST00000460289 ENY2Q9NPA8 101 aa17.34■□□□□ 0.37
PTPN4-208ENST00000460289 MLXQ9UH92 298 aa17.34■□□□□ 0.37
PTPN4-208ENST00000460289 F8W735 103 aaPredicted RBP17.33■□□□□ 0.36
PTPN4-208ENST00000460289 FCGR2BP31994 310 aaPredicted RBP17.33■□□□□ 0.36
PTPN4-208ENST00000460289 ETV6P41212 452 aa17.33■□□□□ 0.36
PTPN4-208ENST00000460289 SPINK9Q5DT21 86 aa17.33■□□□□ 0.36
PTPN4-208ENST00000460289 SELENOHQ8IZQ5 122 aaKnown RBP17.33■□□□□ 0.36
PTPN4-208ENST00000460289 CHRDL1Q9BU40 450 aa17.33■□□□□ 0.36
PTPN4-208ENST00000460289 DAZ1Q9NQZ3 744 aaKnown RBP17.33■□□□□ 0.36
PTPN4-208ENST00000460289 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.33■□□□□ 0.36
PTPN4-208ENST00000460289 NUPL2O15504 423 aaKnown RBP17.32■□□□□ 0.36
PTPN4-208ENST00000460289 MT-CO2P00403 227 aa17.32■□□□□ 0.36
PTPN4-208ENST00000460289 CTSGP08311 255 aa17.32■□□□□ 0.36
PTPN4-208ENST00000460289 RELQ04864 619 aaPredicted RBP17.32■□□□□ 0.36
PTPN4-208ENST00000460289 TOMM5Q8N4H5 51 aa17.32■□□□□ 0.36
PTPN4-208ENST00000460289 PINX1Q96BK5 328 aaKnown RBP17.32■□□□□ 0.36
PTPN4-208ENST00000460289 WDR89Q96FK6 387 aaPredicted RBP17.32■□□□□ 0.36
PTPN4-208ENST00000460289 RCHY1Q96PM5 261 aa17.32■□□□□ 0.36
PTPN4-208ENST00000460289 TMEM56-RWDD3S4R434 201 aa17.32■□□□□ 0.36
PTPN4-208ENST00000460289 TRAV25A0A0B4J276 109 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 A0A0G2JRQ6 117 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 ADMP35318 185 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 HOXA1P49639 335 aaPredicted RBP17.31■□□□□ 0.36
PTPN4-208ENST00000460289 ANKRD55Q3KP44 614 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 TMEM268Q5VZI3 342 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 BTNL8Q6UX41 500 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 Q6ZRM9 215 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 RBPMS2Q6ZRY4 209 aaKnown RBP17.31■□□□□ 0.36
PTPN4-208ENST00000460289 SLC16A13Q7RTY0 426 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 TMEM61Q8N0U2 210 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 OR52E5Q8NH55 327 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 LHFPL5Q8TAF8 219 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 GALNT14Q96FL9 552 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 TM2D3Q9BRN9 247 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 V9GYH0 126 aa17.31■□□□□ 0.36
PTPN4-208ENST00000460289 K7EMT4 169 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 CORTO00230 105 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 CD7P09564 240 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 SPCS3P61009 180 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 KLF9Q13886 244 aaPredicted RBP17.3■□□□□ 0.36
PTPN4-208ENST00000460289 AARDQ4LEZ3 155 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 CCDC190Q86UF4 302 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 DEDD2Q8WXF8 326 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 IL22RA2Q969J5 263 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 C20orf24Q9BUV8 137 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 CACFD1Q9UGQ2 172 aa17.3■□□□□ 0.36
PTPN4-208ENST00000460289 AKR1C4P17516 323 aa17.29■□□□□ 0.36
PTPN4-208ENST00000460289 NPBWR1P48145 328 aa17.29■□□□□ 0.36
PTPN4-208ENST00000460289 DUSP18Q8NEJ0 188 aa17.29■□□□□ 0.36
PTPN4-208ENST00000460289 TRIM63Q969Q1 353 aa17.29■□□□□ 0.36
PTPN4-208ENST00000460289 TMEM230Q96A57 120 aa17.29■□□□□ 0.36
PTPN4-208ENST00000460289 SELENOKQ9Y6D0 94 aa17.29■□□□□ 0.36
PTPN4-208ENST00000460289 TENM3Q9P273 2699 aa17.29■□□□□ 0.36
PTPN4-208ENST00000460289 C15orf62A8K5M9 175 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 OR11H12B2RN74 326 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 GNG7O60262 68 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 ANXA3P12429 323 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 TMEM187Q14656 261 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 ZNF79Q15937 498 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 HAGHQ16775 308 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 SPANXN2Q5MJ10 180 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 PVRIGQ6DKI7 326 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 OR52B4Q8NGK2 314 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 GPR146Q96CH1 333 aa17.28■□□□□ 0.36
PTPN4-208ENST00000460289 SCAF4O95104 1147 aaKnown RBP17.27■□□□□ 0.36
PTPN4-208ENST00000460289 IGHV3-48P01763 117 aa17.27■□□□□ 0.36
PTPN4-208ENST00000460289 RNASE2P10153 161 aaKnown RBP17.27■□□□□ 0.36
PTPN4-208ENST00000460289 LAMTOR1Q6IAA8 161 aa17.27■□□□□ 0.36
PTPN4-208ENST00000460289 CACNG5Q9UF02 275 aa17.27■□□□□ 0.36
PTPN4-208ENST00000460289 PIGBOS1A0A0B4J2F0 54 aa17.26■□□□□ 0.35
PTPN4-208ENST00000460289 YIF1AO95070 293 aa17.26■□□□□ 0.35
PTPN4-208ENST00000460289 DEFB125Q8N687 156 aa17.26■□□□□ 0.35
PTPN4-208ENST00000460289 SPATA25Q9BR10 227 aa17.26■□□□□ 0.35
PTPN4-208ENST00000460289 STAB2Q8WWQ8 2551 aa17.25■□□□□ 0.35
PTPN4-208ENST00000460289 HTR2BP41595 481 aa17.25■□□□□ 0.35
PTPN4-208ENST00000460289 SRPXP78539 464 aa17.25■□□□□ 0.35
PTPN4-208ENST00000460289 LINC00322Q6ZN03 302 aaPredicted RBP17.25■□□□□ 0.35
PTPN4-208ENST00000460289 SPAG8Q99932 426 aaPredicted RBP17.25■□□□□ 0.35
PTPN4-208ENST00000460289 HEYLQ9NQ87 328 aaPredicted RBP17.25■□□□□ 0.35
PTPN4-208ENST00000460289 HUWE1Q7Z6Z7 4374 aaKnown RBP17.24■□□□□ 0.35
PTPN4-208ENST00000460289 IGHV3OR16-8A0A075B7F1 116 aa17.24■□□□□ 0.35
PTPN4-208ENST00000460289 A0A0B4J2A0 478 aa17.24■□□□□ 0.35
PTPN4-208ENST00000460289 SULT1A3P0DMM9 295 aa17.24■□□□□ 0.35
PTPN4-208ENST00000460289 SULT1A4P0DMN0 295 aa17.24■□□□□ 0.35
PTPN4-208ENST00000460289 SUPT4H1P63272 117 aaKnown RBP17.24■□□□□ 0.35
PTPN4-208ENST00000460289 BSXQ3C1V8 233 aa17.24■□□□□ 0.35
PTPN4-208ENST00000460289 LGI3Q8N145 548 aa17.24■□□□□ 0.35
PTPN4-208ENST00000460289 OR10C1Q96KK4 312 aa17.24■□□□□ 0.35
PTPN4-208ENST00000460289 SLC25A21Q9BQT8 299 aaPredicted RBP17.24■□□□□ 0.35
PTPN4-208ENST00000460289 SRD5A3Q9H8P0 318 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms