RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 HEBP2Q9Y5Z4 205 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 ZNF638Q14966 1978 aaKnown RBP4.3□□□□□ -1.72
VPS41-209ENST00000457055 TANC1Q9C0D5 1861 aa4.3□□□□□ -1.72
VPS41-209ENST00000457055 CKAP5Q14008 2032 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 SDK1Q7Z5N4 2213 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 FNDC1Q4ZHG4 1894 aaPredicted RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 TRGV10A0A0A0MS01 117 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 C11orf98E9PRG8 122 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 LINC01619G3V211 115 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 H7C1H1 209 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 K7EP34 96 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 ISLRO14498 428 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 CD5LO43866 347 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 LMX1BO60663 402 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BKO60814 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 KLF7O75840 302 aaPredicted RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BJP06899 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HOXB7P09629 217 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 P0DMU3 169 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 FAM231AP0DMU4 169 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 FAM231CP0DMU5 169 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BOP23527 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BBP33778 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 SRP14P37108 136 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BDP58876 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 LINC00205P59089 165 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 GABARAPL2P60520 117 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BCP62807 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 RPS24P62847 133 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 RIGQ13278 110 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 EIF3IQ13347 325 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST2H2BEQ16778 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 TMEM30BQ3MIR4 351 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 LCN12Q6JVE5 192 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 MORN3Q6PF18 240 aaPredicted RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 SLC25A26Q70HW3 274 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 TRPT1Q86TN4 253 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 ZCCHC24Q8N2G6 241 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 OR5D16Q8NGK9 328 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 OR1L3Q8NH93 324 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 OR2T6Q8NHC8 308 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 TWIST2Q8WVJ9 160 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 KLK6Q92876 244 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BHQ93079 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 C2orf48Q96LS8 159 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 METTL26Q96S19 204 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 LINC01587Q99440 93 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 SDF2Q99470 211 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 SPIN2AQ99865 258 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BNQ99877 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 HIST1H2BMQ99879 126 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 SPIN2BQ9BPZ2 258 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 SLC25A21Q9BQT8 299 aaPredicted RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 SNRNP25Q9BV90 132 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 TM2D2Q9BX73 214 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 SLIRPQ9GZT3 109 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 PDFQ9HBH1 243 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 NPVFQ9HCQ7 196 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 ESM1Q9NQ30 184 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 C19orf25Q9UFG5 118 aaPredicted RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 RPUSD1Q9UJJ7 312 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 ASXL3Q9C0F0 2248 aa4.29□□□□□ -1.72
VPS41-209ENST00000457055 BAZ2AQ9UIF9 1905 aaKnown RBP4.29□□□□□ -1.72
VPS41-209ENST00000457055 TEP1Q99973 2627 aaKnown RBP4.28□□□□□ -1.72
VPS41-209ENST00000457055 AKAP13Q12802 2813 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 KIAA1671Q9BY89 1806 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 TRBV19A0A075B6N1 114 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 IGKV2D-30A0A075B6S6 120 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 A0A087WWV3 80 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 TRAV4A0A0B4J268 109 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 IGLC7A0M8Q6 106 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 PLAC8L1A1L4L8 177 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 ZNF705FA8MVS1 300 aaPredicted RBP4.28□□□□□ -1.72
VPS41-209ENST00000457055 GABARAPH6UMI1 98 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 SIX6O95475 246 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 CYB5AP00167 134 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 KRASP01116 189 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 OR9G9P0C7N8 305 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 ZNF705DP0CH99 300 aaPredicted RBP4.28□□□□□ -1.72
VPS41-209ENST00000457055 ZNF705BP0CI00 300 aaPredicted RBP4.28□□□□□ -1.72
VPS41-209ENST00000457055 PPIBP23284 216 aaKnown RBP4.28□□□□□ -1.72
VPS41-209ENST00000457055 OPRK1P41145 380 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 TMEM258P61165 79 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 PLGLB1Q02325 96 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 RNASE12Q5GAN4 147 aaKnown RBP4.28□□□□□ -1.72
VPS41-209ENST00000457055 FAM120AOSQ5T036 256 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 TMEM14EPQ6UXP3 125 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 Q6ZRU5 148 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 Q6ZUT4 128 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 Q6ZVQ6 151 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 ZNF441Q8N8Z8 693 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 DCAF4L2Q8NA75 395 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 OR1J1Q8NGS3 322 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 OR52N5Q8NH56 324 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 LMO3Q8TAP4 145 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 SLC25A40Q8TBP6 338 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 ZNF501Q96CX3 271 aaPredicted RBP4.28□□□□□ -1.72
VPS41-209ENST00000457055 RTP4Q96DX8 246 aa4.28□□□□□ -1.72
VPS41-209ENST00000457055 BORCS8Q96FH0 119 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms