RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NDUFB8O95169 186 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 MPC2O95563 127 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 TMEM50AO95807 157 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 PET100P0DJ07 73 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 PAX9P55771 341 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 RAB11AP62491 216 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 ATP5G2Q06055 141 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 KHDC1LQ5JSQ8 128 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 SPANXN5Q5MJ07 72 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 PVRIGQ6DKI7 326 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 ZNF491Q8N8L2 437 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 MYOZ3Q8TDC0 251 aa12.28□□□□□ -0.44
USP40-206ENST00000443711 PAIP2BQ9ULR5 123 aaKnown RBP12.28□□□□□ -0.44
USP40-206ENST00000443711 TSSC4Q9Y5U2 329 aaPredicted RBP12.28□□□□□ -0.44
USP40-206ENST00000443711 OR8U8P0C7N1 319 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 CDX1P47902 265 aaPredicted RBP12.27□□□□□ -0.45
USP40-206ENST00000443711 FGL1Q08830 312 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 KIAA0141Q14154 515 aaPredicted RBP12.27□□□□□ -0.45
USP40-206ENST00000443711 KRTAP21-3Q3LHN1 58 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 RNASEH2CQ8TDP1 164 aaKnown RBP12.27□□□□□ -0.45
USP40-206ENST00000443711 CHAC2Q8WUX2 184 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 TMEM170AQ8WVE7 144 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 UBE2E2Q96LR5 201 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 MDFIQ99750 246 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 CITED1Q99966 193 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 CITED2Q99967 270 aaPredicted RBP12.27□□□□□ -0.45
USP40-206ENST00000443711 C11orf1Q9H5F2 150 aa12.27□□□□□ -0.45
USP40-206ENST00000443711 A0A1B0GVG6 124 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 C15orf62A8K5M9 175 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 E5RGE8 158 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 H3BP45 60 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 IFNA4P05014 189 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 BCAP31P51572 246 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 DEFA5Q01523 94 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 EXOSC2Q13868 293 aaKnown RBP12.26□□□□□ -0.45
USP40-206ENST00000443711 C15orf32Q32M92 178 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 THAP6Q8TBB0 222 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 VN1R17PQ8TDU5 208 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 PINX1Q96BK5 328 aaKnown RBP12.26□□□□□ -0.45
USP40-206ENST00000443711 CXorf58Q96LI9 332 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 OR4C12Q96R67 309 aa12.26□□□□□ -0.45
USP40-206ENST00000443711 H0YIZ8 118 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 PRSS54Q6PEW0 395 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 SHISA2Q6UWI4 295 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 ETV3LQ6ZN32 361 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 NDUFA11Q86Y39 141 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 EEF1AKMT3Q96AZ1 226 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 RNF126Q9BV68 326 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 OR5AC2Q9NZP5 309 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 TENM1Q9UKZ4 2725 aa12.25□□□□□ -0.45
USP40-206ENST00000443711 TRBV7-1A0A0A6YYK4 115 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 RPS10-NUDT3A0A1W2PQS6 291 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 NUDT19A8MXV4 375 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 I3L2K1 104 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 K7EIM0 57 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 MT-CO2P00403 227 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 IGHV3-11P01762 117 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 OPRK1P41145 380 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 P2RY1P47900 373 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 CAV2P51636 162 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 FAM209BQ5JX69 171 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 HIST2H2BDQ6DRA6 164 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 ETFRF1Q6IPR1 90 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 TMEM14EPQ6UXP3 125 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 OR2T35Q8NGX2 323 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 SCARB1Q8WTV0 552 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 LYRM2Q9NU23 88 aaPredicted RBP12.24□□□□□ -0.45
USP40-206ENST00000443711 MBD2Q9UBB5 411 aa12.24□□□□□ -0.45
USP40-206ENST00000443711 IGHV3-21A0A0B4J1V1 117 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 A0A1W2PRX2 142 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 FAM24AA6NFZ4 105 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 CCNKO75909 580 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 SCAF4O95104 1147 aaKnown RBP12.23□□□□□ -0.45
USP40-206ENST00000443711 LGALS1P09382 135 aaKnown RBP12.23□□□□□ -0.45
USP40-206ENST00000443711 LYL1P12980 280 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 GPX4P36969 197 aaPredicted RBP12.23□□□□□ -0.45
USP40-206ENST00000443711 MFAP4P55083 255 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 RUNX1Q01196 453 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 ZNF343Q6P1L6 599 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 KLHL30-AS1Q8NEE0 82 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 C4orf3Q8WVX3 66 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 OR5B12Q96R08 314 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 SLC25A31Q9H0C2 315 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 GNB4Q9HAV0 340 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 STAB1Q9NY15 2570 aa12.23□□□□□ -0.45
USP40-206ENST00000443711 TRAV14DV4A0A0A6YYC5 116 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 MFSD2BA6NFX1 497 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 METTL15P1P0C7V9 234 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 SLC25A4P12235 298 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 CD69Q07108 199 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 MLANAQ16655 118 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 NSUN5P1Q3KNT7 163 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 TMEM252Q8N6L7 170 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 OR10P1Q8NGE3 313 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 ZNF502Q8TBZ5 544 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 CACNG8Q8WXS5 425 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 DCUN1D4Q92564 292 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 TXN2Q99757 166 aa12.22□□□□□ -0.45
USP40-206ENST00000443711 FNDC4Q9H6D8 234 aaPredicted RBP12.22□□□□□ -0.45
USP40-206ENST00000443711 RANGRFQ9HD47 186 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms