RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 C4orf3Q8WVX3 66 aa9.37□□□□□ -0.91
LINC00539-202ENST00000423575 MISP3Q96FF7 219 aa9.37□□□□□ -0.91
LINC00539-202ENST00000423575 USMG5Q96IX5 58 aa9.37□□□□□ -0.91
LINC00539-202ENST00000423575 CIB3Q96Q77 187 aaPredicted RBP9.37□□□□□ -0.91
LINC00539-202ENST00000423575 HIPK2Q9H2X6 1198 aa9.37□□□□□ -0.91
LINC00539-202ENST00000423575 S4R3C0 116 aa9.37□□□□□ -0.91
LINC00539-202ENST00000423575 WNK1Q9H4A3 2382 aa9.37□□□□□ -0.91
LINC00539-202ENST00000423575 VWFP04275 2813 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 IGHV3-21A0A0B4J1V1 117 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 C15orf62A8K5M9 175 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 I3L521 148 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 CYB5BO43169 146 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 TSPAN15O95858 294 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 IFNA10P01566 189 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 IGHV3-23P01764 117 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 LGALS1P09382 135 aaKnown RBP9.36□□□□□ -0.91
LINC00539-202ENST00000423575 SUB1P53999 127 aaKnown RBP eCLIP9.36□□□□□ -0.91
LINC00539-202ENST00000423575 PAX9P55771 341 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 S100A10P60903 97 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 RRAS2P62070 204 aaPredicted RBP9.36□□□□□ -0.91
LINC00539-202ENST00000423575 RUNX1Q01196 453 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 RAB32Q13637 225 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 DEFB136Q30KP8 78 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 ZNF343Q6P1L6 599 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 ETV3LQ6ZN32 361 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 Q6ZNX1 250 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 CCDC140Q96MF4 163 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 DUX3Q96PT4 197 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 OR4C12Q96R67 309 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 NMES1Q9C002 83 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 LSM5Q9Y4Y9 91 aaKnown RBP9.36□□□□□ -0.91
LINC00539-202ENST00000423575 U3KQ87 197 aa9.36□□□□□ -0.91
LINC00539-202ENST00000423575 H3BP45 60 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 I3L2K1 104 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 MT-CO2P00403 227 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 TRBV12-3P01733 135 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 ZNF502Q8TBZ5 544 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 VN1R17PQ8TDU5 208 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 PINX1Q96BK5 328 aaKnown RBP9.35□□□□□ -0.91
LINC00539-202ENST00000423575 RAX2Q96IS3 184 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 RAB40CQ96S21 281 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 C11orf1Q9H5F2 150 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 FNDC4Q9H6D8 234 aaPredicted RBP9.35□□□□□ -0.91
LINC00539-202ENST00000423575 THYN1Q9P016 225 aa9.35□□□□□ -0.91
LINC00539-202ENST00000423575 IGHV4OR15-8A0A075B7B6 117 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 A0A087WW49 117 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 LY86O95711 162 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 IGHV3-48P01763 117 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 CYCSP99999 105 aaKnown RBP9.34□□□□□ -0.91
LINC00539-202ENST00000423575 LRRC37A5PQ49AS3 106 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 SPANXN5Q5MJ07 72 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 SCARB1Q8WTV0 552 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 PPP1R1CQ8WVI7 109 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 EEF1AKMT3Q96AZ1 226 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 SMIM8Q96KF7 97 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 CXorf58Q96LI9 332 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 PSENENQ9NZ42 101 aa9.34□□□□□ -0.91
LINC00539-202ENST00000423575 TRRAPQ9Y4A5 3859 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.33□□□□□ -0.92
LINC00539-202ENST00000423575 ANKRD34BA5PLL1 514 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 F8W735 103 aaPredicted RBP9.33□□□□□ -0.92
LINC00539-202ENST00000423575 H0YIZ8 118 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 M0QZ24 198 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 CCL24O00175 119 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 CORTO00230 105 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 ATP5IP56385 69 aaPredicted RBP9.33□□□□□ -0.92
LINC00539-202ENST00000423575 TAS2R30P59541 319 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 FHL3Q13643 280 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 MLANAQ16655 118 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 NOXA1Q86UR1 476 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 OR4F17Q8NGA8 305 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 RNASEH2CQ8TDP1 164 aaKnown RBP9.33□□□□□ -0.92
LINC00539-202ENST00000423575 OR4F4Q96R69 305 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 C21orf62Q9NYP8 219 aa9.33□□□□□ -0.92
LINC00539-202ENST00000423575 MRPL36Q9P0J6 103 aaKnown RBP9.33□□□□□ -0.92
LINC00539-202ENST00000423575 PAIP2BQ9ULR5 123 aaKnown RBP9.33□□□□□ -0.92
LINC00539-202ENST00000423575 STRAPQ9Y3F4 350 aaKnown RBP9.33□□□□□ -0.92
LINC00539-202ENST00000423575 TRBV7-1A0A0A6YYK4 115 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 PRSS46E5RG02 174 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 L7N2F9 121 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 BMPR1BO00238 502 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 TSC22D2O75157 780 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 DEDDO75618 318 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 CCNKO75909 580 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 HSPB1P04792 205 aaKnown RBP9.32□□□□□ -0.92
LINC00539-202ENST00000423575 IFNA4P05014 189 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 GIPP09681 153 aaPredicted RBP9.32□□□□□ -0.92
LINC00539-202ENST00000423575 OR8U8P0C7N1 319 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 GPR183P32249 361 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 OPRK1P41145 380 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 VAMP2P63027 116 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 RPP30P78346 268 aaKnown RBP9.32□□□□□ -0.92
LINC00539-202ENST00000423575 TMEM14EPQ6UXP3 125 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 CLEC19AQ6UXS0 136 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 SLC16A13Q7RTY0 426 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 OR11H1Q8NG94 326 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 OR1N2Q8NGR9 330 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 ZNF436Q9C0F3 470 aaPredicted RBP9.32□□□□□ -0.92
LINC00539-202ENST00000423575 OR5AC2Q9NZP5 309 aa9.32□□□□□ -0.92
LINC00539-202ENST00000423575 PEF1Q9UBV8 284 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms