RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SLC25A40Q8TBP6 338 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 SAP25Q8TEE9 199 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 DDB2Q92466 427 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 NUDT11Q96G61 164 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 S1PR3Q99500 378 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 SCRT2Q9NQ03 307 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 DUSP13Q9UII6 198 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 ZNF835Q9Y2P0 537 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 K7ERU9 68 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 CD5LO43866 347 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 HLA-DRB1P01911 266 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 NANOS1Q8WY41 292 aaKnown RBP8.75□□□□□ -1.01
USP54-204ENST00000422491 SLC25A33Q9BSK2 321 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 IFI27L2Q9H2X8 130 aa8.75□□□□□ -1.01
USP54-204ENST00000422491 PCSK5Q92824 1860 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 TRAV8-6A0A0B4J262 113 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 IGHV1-24A0A0C4DH33 117 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 HIGD1CA8MV81 97 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 TMEM238C9JI98 176 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 CAMPP49913 170 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 ZNF134P52741 427 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 TRAT1Q6PIZ9 186 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 C1orf229Q6ZS94 237 aaPredicted RBP8.74□□□□□ -1.01
USP54-204ENST00000422491 ATP5L2Q7Z4Y8 100 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 C19orf24Q9BVV8 132 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 C12orf49Q9H741 205 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 C8orf88P0DMB2 117 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 MYOD1P15172 320 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 DUSP3P51452 185 aaPredicted RBP8.74□□□□□ -1.01
USP54-204ENST00000422491 VHLLQ6RSH7 139 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 WDR82Q6UXN9 313 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 FAM167A-AS1Q96KT0 104 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 C7orf69Q9H7B7 122 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 GNG12Q9UBI6 72 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 JPT1Q9UK76 154 aa8.74□□□□□ -1.01
USP54-204ENST00000422491 CORTO00230 105 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 KIR2DS2P43631 304 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 MORN5Q5VZ52 161 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 SMIM12Q96EX1 92 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 SLC25A2Q9BXI2 301 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 OBP2BQ9NPH6 170 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 PI4KAP42356 2102 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 DOCK10Q96BY6 2186 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 IGLC1P0CG04 106 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 MPV17P39210 176 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 MAGEA5P43359 124 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 EDDM3AQ14507 147 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 C3AR1Q16581 482 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 PRR31Q5SQ13 230 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 FAM162BQ5T6X4 162 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 OR4S2Q8NH73 311 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 CHCHD1Q96BP2 118 aaKnown RBP8.73□□□□□ -1.01
USP54-204ENST00000422491 FAM173AQ9BQD7 235 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 ENY2Q9NPA8 101 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 IDI2-AS1Q9NZ38 188 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 AMMECR1Q9Y4X0 333 aaPredicted RBP8.73□□□□□ -1.01
USP54-204ENST00000422491 CELSR3Q9NYQ7 3312 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 COL6A3P12111 3177 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 TMEM265A0A087WTH1 108 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 PSMB11A5LHX3 300 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 LEPROTL1O95214 131 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 IGHV3-13P01766 116 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 IGHV3-7P01780 117 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 LOXL3P58215 753 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 HIST1H1AQ02539 215 aaPredicted RBP8.73□□□□□ -1.01
USP54-204ENST00000422491 SSX8Q7RTT4 187 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 CD177Q8N6Q3 437 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 SARAFQ96BY9 339 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 HES7Q9BYE0 225 aa8.73□□□□□ -1.01
USP54-204ENST00000422491 PEF1Q9UBV8 284 aaKnown RBP8.73□□□□□ -1.01
USP54-204ENST00000422491 DNAJC13O75165 2243 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 A0A087X0K7 114 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 LOC102724200A0A096LPH7 203 aaPredicted RBP8.72□□□□□ -1.01
USP54-204ENST00000422491 TRAV5A0A0B4J249 113 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 UBE2L3P68036 154 aaKnown RBP8.72□□□□□ -1.01
USP54-204ENST00000422491 MRPL49Q13405 166 aaKnown RBP8.72□□□□□ -1.01
USP54-204ENST00000422491 KLF14Q8TD94 323 aaPredicted RBP8.72□□□□□ -1.01
USP54-204ENST00000422491 TMEM191AQ9H0A3 160 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 MEGF9Q9H1U4 602 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 SAP30O75446 220 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 HIST1H1EP10412 219 aaKnown RBP8.72□□□□□ -1.01
USP54-204ENST00000422491 FOXA3P55318 350 aaPredicted RBP8.72□□□□□ -1.01
USP54-204ENST00000422491 ZNF841Q6ZN19 808 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 OR9G1Q8NH87 305 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 CHRDL1Q9BU40 450 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 MRPL32Q9BYC8 188 aaKnown RBP8.72□□□□□ -1.01
USP54-204ENST00000422491 B4GALT7Q9UBV7 327 aa8.72□□□□□ -1.01
USP54-204ENST00000422491 FAM186AA6NE01 2351 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 HSBP1L1C9JCN9 74 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 PEX7O00628 323 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 HBBP68871 147 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 RAB30Q15771 203 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 SMIM21Q3B7S5 101 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 UTF1Q5T230 341 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 ZNF329Q86UD4 541 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 HINT2Q9BX68 163 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 CXXC4Q9H2H0 198 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 MS4A6AQ9H2W1 248 aa8.71□□□□□ -1.01
USP54-204ENST00000422491 CHTOPQ9Y3Y2 248 aaKnown RBP8.71□□□□□ -1.01
USP54-204ENST00000422491 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms