RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 LGALS14Q8TCE9 139 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 SMIM19Q96E16 107 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 CPNE2Q96FN4 548 aaPredicted RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 C2orf50Q96LR7 162 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 ZNF75AQ96N20 296 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 YPEL4Q96NS1 127 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 PRAP1Q96NZ9 151 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 TIMM29Q9BSF4 260 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 ADAT1Q9BUB4 502 aaKnown RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 MS4A8Q9BY19 250 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 PARD6GQ9BYG4 376 aaPredicted RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 ULBP2Q9BZM5 246 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 OR2J1Q9GZK6 312 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 SLC25A31Q9H0C2 315 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 CST11Q9H112 138 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 PLEKHF2Q9H8W4 249 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 HDGFL3Q9Y3E1 203 aa2.75□□□□□ -1.97
VPS54-204ENST00000416400 BAZ2BQ9UIF8 2168 aaKnown RBP2.75□□□□□ -1.97
VPS54-204ENST00000416400 SIPA1L3O60292 1781 aaPredicted RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 ARAP2Q8WZ64 1704 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 IGHV6-1A0A0B4J1U7 121 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 CCL15-CCL14A0A0B4J2E2 113 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 A0A1B0GV72 72 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 TMEM235A6NFC5 223 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 RBFOX3A6NFN3 312 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 OR51F1A6NGY5 319 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 A6NIN4 97 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 FAM183AA6NL82 134 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ZNF850A8MQ14 1090 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ZNF705FA8MVS1 300 aaPredicted RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 EEF1E1-BLOC1S5C9J1V9 151 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 F6UZH7 168 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 H3BQ15 152 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 M0R129 80 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 PIRO00625 290 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 FFAR1O14842 300 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 CYB5R3P00387 301 aaPredicted RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 TRGC2P03986 189 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 OPN1SWP03999 348 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 SOD3P08294 240 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 CTXN2P0C2S0 81 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 NBEAP1P0C6P0 100 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ZNF705DP0CH99 300 aaPredicted RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 ZNF705BP0CI00 300 aaPredicted RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 LIPCP11150 499 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 HBA1P69905 142 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ELOBQ15370 118 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 CCL15Q16663 113 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 C18orf21Q32NC0 220 aaPredicted RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 BSXQ3C1V8 233 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ZNF791Q3KP31 576 aaPredicted RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 Q499Y3 187 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 MORN2Q502X0 79 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 TRMT12Q53H54 448 aaKnown RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 CST9Q5W186 159 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 CLEC18BQ6UXF7 455 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 GKN2Q86XP6 184 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 CLECL1Q8IZS7 167 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 C10orf111Q8N326 155 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 TCTEX1D1Q8N7M0 179 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 OR4D6Q8NGJ1 314 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 OR5L1Q8NGL2 311 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 OR4C16Q8NGL9 310 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 OR2V1Q8NHB1 315 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 DOK4Q8TEW6 326 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 MAL2Q969L2 176 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 GNPNAT1Q96EK6 184 aaPredicted RBP2.74□□□□□ -1.97
VPS54-204ENST00000416400 LINC00477Q96M19 166 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 IP6K3Q96PC2 410 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ZNF649Q9BS31 505 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 EFCAB11Q9BUY7 163 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 TBL1XR1Q9BZK7 514 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ULBP1Q9BZM6 244 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 SLC2A9Q9NRM0 540 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 CMC2Q9NRP2 79 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 GSKIPQ9P0R6 139 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 CKLFQ9UBR5 152 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 UQCR10Q9UDW1 63 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 OR5V1Q9UGF6 321 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 NAGKQ9UJ70 344 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ZNF337Q9Y3M9 751 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 ARL5AQ9Y689 179 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 PTPRFP10586 1907 aa2.74□□□□□ -1.97
VPS54-204ENST00000416400 MICAL3Q7RTP6 2002 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 AHDC1Q5TGY3 1603 aaPredicted RBP2.73□□□□□ -1.97
VPS54-204ENST00000416400 A0A087WUU8 490 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 IGHV1-3A0A0C4DH29 117 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 MAP1LC3B2A6NCE7 125 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 LRCOL1A6NCL2 159 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 J3QR89 54 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 NDUFS5O43920 106 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 CNMDO75829 334 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 OR2J2O76002 312 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 SFT2D2O95562 160 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 IFNA1P01562 189 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 CD3DP04234 171 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 SMIM10L2AP0DMW4 78 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 SMIM10L2BP0DMW5 78 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 KCNE1P15382 129 aa2.73□□□□□ -1.97
VPS54-204ENST00000416400 RPL12P30050 165 aaKnown RBP2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms