RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 APCSP02743 223 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 PMCHP20382 165 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 BMP5P22003 454 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 CRYBB3P26998 211 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 GLRXP35754 106 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 CASP6P55212 293 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 SPATA45Q537H7 98 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 TMEM177Q53S58 311 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 RPL39P5Q59GN2 51 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 TEX36Q5VZQ5 186 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 STUMQ69YW2 141 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 LINC00696Q6ZRV3 163 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 C1orf229Q6ZS94 237 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 C1orf210Q8IVY1 113 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 NHLRC2Q8NBF2 726 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 SSMEM1Q8WWF3 244 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 CHCHD1Q96BP2 118 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 STARD4Q96DR4 205 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 NDUFA4L2Q9NRX3 87 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 LAMTOR2Q9Y2Q5 125 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 PAM16Q9Y3D7 125 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 PRR14LQ5THK1 2151 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 TRAV9-2A0A087WT02 112 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 IGHV1-69-2A0A0G2JMI3 117 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 A0A1W2PN81 502 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 RNF223E7ERA6 249 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 J3QR06 171 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 LYZL6O75951 148 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 CA7P43166 264 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF137PP52743 207 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 LINC00205P59089 165 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 MEF2CQ06413 473 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 VASH2Q86V25 355 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 LINC00311Q8N616 119 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 SARAFQ96BY9 339 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 SLC25A2Q9BXI2 301 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 PRSS22Q9GZN4 317 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 DEFB127Q9H1M4 99 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 SLC35D1Q9NTN3 355 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 RPUSD1Q9UJJ7 312 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 RNF114Q9Y508 228 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 TEX50A0A1B0GTY4 177 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 MBD3L4A6NDZ8 208 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 MBD3L3A6NE82 208 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 MBD3L5A6NJ08 208 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 DEFB108AA8MXU0 73 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 F2Z2F3 143 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 HLA-DRB1P01911 266 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 NPSP0C0P6 89 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 HIST1H1EP10412 219 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 USF1P22415 310 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 KLF3P57682 345 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 PLP1P60201 277 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 SPACA3Q8IXA5 215 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 OR2Z1Q8NG97 314 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 MBD3L2Q8NHZ7 208 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 RFESDQ8TAC1 157 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 VSTM2AQ8TAG5 236 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 DCTN5Q9BTE1 182 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 DNAJC4Q9NNZ3 241 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF331Q9NQX6 463 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 IL17BQ9UHF5 180 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 DNAJC13O75165 2243 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 C2orf70A6NJV1 201 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 CRYGCP07315 174 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 OR5AL1P0C617 328 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 G0S2P27469 103 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 TSPOP30536 169 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 SRIP30626 198 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 CHRNB4P30926 498 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 RPS16P62249 146 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 TIMM23BQ5SRD1 257 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF788Q6ZQV5 615 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF329Q86UD4 541 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 CXorf67Q86X51 503 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 MUC15Q8N387 334 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 OR5AN1Q8NGI8 311 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 TMEM167AQ8TBQ9 72 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 BORCS7Q96B45 105 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 RCHY1Q96PM5 261 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 ALKBH7Q9BT30 221 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 MLST8Q9BVC4 326 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 GAL3ST2Q9H3Q3 398 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 LINC00312Q9Y6C7 94 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 LAMA1P25391 3075 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 TCRBV4S1A1TA0A5B7 111 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 SRRM4A7MD48 611 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 NPIPB6E9PJ23 425 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 NDUFB8O95169 186 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 CT45A6P0DMU7 189 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 CT45A5P0DMU8 189 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 CT45A7P0DMV0 189 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 CD59P13987 128 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 HNRNPA3P51991 378 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 KRTDAPP60985 99 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 MMDQ15546 238 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 BHLHA15Q7RTS1 189 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 VKORC1L1Q8N0U8 176 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 TPRX1Q8N7U7 411 aa4.66□□□□□ -1.66
CCDC88A-203ENST00000412148 TRIB1Q96RU8 372 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms