RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SULT1A3P0DMM9 295 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 SULT1A4P0DMN0 295 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 TAS2R19P59542 299 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 SRSF9Q13242 221 aaKnown RBP eCLIP4.92□□□□□ -1.62
USP40-202ENST00000409945 UNC119Q13432 240 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 FCN2Q15485 313 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 MORN2Q502X0 79 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 LY6G6FQ5SQ64 297 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 HOGA1Q86XE5 327 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 Q8N2B8 174 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 FAM89BQ8N5H3 189 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 OR4F17Q8NGA8 305 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 OR10G8Q8NGN5 311 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 OR1L1Q8NH94 360 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 UBALD1Q8TB05 177 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 GPX8Q8TED1 209 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 RTN4IP1Q8WWV3 396 aaPredicted RBP4.92□□□□□ -1.62
USP40-202ENST00000409945 TAF15Q92804 592 aaKnown RBP eCLIP4.92□□□□□ -1.62
USP40-202ENST00000409945 OR4F4Q96R69 305 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 NICN1Q9BSH3 213 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 PECRQ9BY49 303 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 RBM7Q9Y580 266 aaKnown RBP4.92□□□□□ -1.62
USP40-202ENST00000409945 TRBV6-6A0A0A6YYG2 114 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 HELTA6NFD8 242 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 SOCS1O15524 211 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 FABP7O15540 132 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 CREBL2O60519 120 aaPredicted RBP4.91□□□□□ -1.62
USP40-202ENST00000409945 GSTT2P0CG29 244 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 S100A1P23297 94 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 CD24P25063 80 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 REG1BP48304 166 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ATP5IP56385 69 aaPredicted RBP4.91□□□□□ -1.62
USP40-202ENST00000409945 HLA-DRB3P79483 266 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 SLAQ13239 276 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 HMGN3Q15651 99 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 FAM71F2Q6NXP2 309 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 COMMD1Q8N668 190 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 TMEM229BQ8NBD8 167 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 OR11H7Q8NGC8 314 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 OR4C16Q8NGL9 310 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 OR10R2Q8NGX6 335 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 OR10J5Q8NHC4 309 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 C11orf45Q8TAV5 145 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ARHGAP5-AS1Q96IT6 56 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ZNF251Q9BRH9 671 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ZNF702PQ9H963 129 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ZNF581Q9P0T4 197 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 AK3Q9UIJ7 227 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 SCP2D1Q9UJQ7 156 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 TET2Q6N021 2002 aaPredicted RBP4.91□□□□□ -1.62
USP40-202ENST00000409945 TRDCB7Z8K6 153 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ITGB1BP1O14713 200 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ARPC1BO15143 372 aaKnown RBP4.91□□□□□ -1.62
USP40-202ENST00000409945 NAPSAO96009 420 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 OR5H8P0DN80 308 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 PTHLHP12272 177 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 TBPP20226 339 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 C4BPBP20851 252 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 PPP1CCP36873 323 aaKnown RBP4.91□□□□□ -1.62
USP40-202ENST00000409945 CEACAM6P40199 344 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ZNF137PP52743 207 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 PAX9P55771 341 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 BLCAPP62952 87 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 QRFPP83859 136 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 MEF2DQ14814 521 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 LDLRAD2Q5SZI1 272 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 THOC7Q6I9Y2 204 aaKnown RBP4.91□□□□□ -1.62
USP40-202ENST00000409945 STEAP1BQ6NZ63 245 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 SLC35E3Q7Z769 313 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 NDUFA11Q86Y39 141 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 OR5AU1Q8NGC0 362 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 OR4A4PQ8NGN8 299 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 ASB13Q8WXK3 278 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 SLC25A21Q9BQT8 299 aaPredicted RBP4.91□□□□□ -1.62
USP40-202ENST00000409945 GINS4Q9BRT9 223 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 SIGLEC9Q9Y336 463 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 NBEAL1Q6ZS30 2694 aa4.91□□□□□ -1.62
USP40-202ENST00000409945 C13orf42A0A1B0GVH6 325 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 TCRBV4S1A1TA0A5B7 111 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 PSMB11A5LHX3 300 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 OR5H14A6NHG9 310 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 H7C2Y5 167 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 RAB3DO95716 219 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 APOA2P02652 100 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 GIPP09681 153 aaPredicted RBP4.9□□□□□ -1.62
USP40-202ENST00000409945 CTXN2P0C2S0 81 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 HIST1H1DP16402 221 aaKnown RBP4.9□□□□□ -1.62
USP40-202ENST00000409945 GNG2P59768 71 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 EBI3Q14213 229 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 PLGLAQ15195 96 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 MMDQ15546 238 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 NSUN5P1Q3KNT7 163 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 CT45A1Q5HYN5 189 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 ZNF767PQ75MW2 155 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 CT45A3Q8NHU0 189 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 ZNF431Q8TF32 576 aaPredicted RBP4.9□□□□□ -1.62
USP40-202ENST00000409945 ZNF436Q9C0F3 470 aaPredicted RBP4.9□□□□□ -1.62
USP40-202ENST00000409945 ALX4Q9H161 411 aaPredicted RBP4.9□□□□□ -1.62
USP40-202ENST00000409945 PLSCR3Q9NRY6 295 aa4.9□□□□□ -1.62
USP40-202ENST00000409945 FLVCR2Q9UPI3 526 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms