RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TRAV5A0A0B4J249 113 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 M0QZK8 103 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 CA1P00915 261 aaPredicted RBP10.34□□□□□ -0.75
SHMT1-205ENST00000395684 RNASE2P10153 161 aaKnown RBP10.34□□□□□ -0.75
SHMT1-205ENST00000395684 PPOXP50336 477 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 KRTDAPP60985 99 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 C2orf83Q53S99 150 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 WDR73Q6P4I2 378 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 LOXL4Q96JB6 756 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 LINC00479Q96M42 142 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 GAFA1Q96PS6 74 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 RAB9BQ9NP90 201 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 SLC35D1Q9NTN3 355 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 IGLV3-9A0A075B6K5 115 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 A0A1W2PS18 150 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 MT-ND6P03923 174 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 SAA1P0DJI8 122 aaPredicted RBP10.34□□□□□ -0.75
SHMT1-205ENST00000395684 MGST1P10620 155 aaKnown RBP10.34□□□□□ -0.75
SHMT1-205ENST00000395684 GATA4P43694 442 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 IBA57Q5T440 356 aaKnown RBP10.34□□□□□ -0.75
SHMT1-205ENST00000395684 MRPL54Q6P161 138 aaKnown RBP10.34□□□□□ -0.75
SHMT1-205ENST00000395684 SLC25A48Q6ZT89 311 aaKnown RBP10.34□□□□□ -0.75
SHMT1-205ENST00000395684 NHLRC2Q8NBF2 726 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 FAM168AQ92567 244 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 RND1Q92730 232 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 NRN1Q9NPD7 142 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 DCAF16Q9NXF7 216 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 RNF7Q9UBF6 113 aa10.34□□□□□ -0.75
SHMT1-205ENST00000395684 A0A1W2PRE2 83 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 SMIM27A0A1W2PRY6 76 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 BMPR1BO00238 502 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 C8orf88P0DMB2 117 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 PNKDQ8N490 385 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 FAM167A-AS1Q96KT0 104 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 MUC6Q6W4X9 2439 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 PSMB11A5LHX3 300 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 ZNF253O75346 499 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 RPLP1P05386 114 aaKnown RBP10.33□□□□□ -0.76
SHMT1-205ENST00000395684 SRIP30626 198 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 AMTP48728 403 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 TAS2R45P59539 299 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 CD69Q07108 199 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 OR10J3Q5JRS4 329 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 RPRMLQ8N4K4 120 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 OR2T6Q8NHC8 308 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 TMEM208Q9BTX3 173 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 C19orf24Q9BVV8 132 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 LINC00574Q9H8X3 128 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 SERTAD4Q9NUC0 356 aa10.33□□□□□ -0.76
SHMT1-205ENST00000395684 RPUSD1Q9UJJ7 312 aaKnown RBP10.33□□□□□ -0.76
SHMT1-205ENST00000395684 MBD3L4A6NDZ8 208 aaPredicted RBP10.32□□□□□ -0.76
SHMT1-205ENST00000395684 MBD3L3A6NE82 208 aaPredicted RBP10.32□□□□□ -0.76
SHMT1-205ENST00000395684 MBD3L5A6NJ08 208 aaPredicted RBP10.32□□□□□ -0.76
SHMT1-205ENST00000395684 DIRC3C9JPN6 131 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 E7EUB6 86 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 RTL8BQ17RB0 113 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 TIMM23BQ5SRD1 257 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 CYB5R2Q6BCY4 276 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 MRPL52Q86TS9 123 aaKnown RBP10.32□□□□□ -0.76
SHMT1-205ENST00000395684 OR1L8Q8NGR8 309 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 MBD3L2Q8NHZ7 208 aaPredicted RBP10.32□□□□□ -0.76
SHMT1-205ENST00000395684 SLC25A2Q9BXI2 301 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 ZNF586Q9NXT0 402 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 CDC42EP3Q9UKI2 254 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 SPTBN2O15020 2390 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 IGHV1-46P01743 117 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 AMY1AP04745 511 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 PMCHP20382 165 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 SSBP2P81877 361 aaPredicted RBP10.32□□□□□ -0.76
SHMT1-205ENST00000395684 ZNF788Q6ZQV5 615 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 C22orf34Q6ZV56 151 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 OR5B3Q8NH48 314 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 KCNS1Q96KK3 526 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 BET1LQ9NYM9 111 aa10.32□□□□□ -0.76
SHMT1-205ENST00000395684 YLPM1P49750 1951 aaKnown RBP10.32□□□□□ -0.76
SHMT1-205ENST00000395684 RPL19P84098 196 aaKnown RBP10.31□□□□□ -0.76
SHMT1-205ENST00000395684 TNFAIP6P98066 277 aaPredicted RBP10.31□□□□□ -0.76
SHMT1-205ENST00000395684 RNF2Q99496 336 aa10.31□□□□□ -0.76
SHMT1-205ENST00000395684 SSBP3Q9BWW4 388 aaPredicted RBP10.31□□□□□ -0.76
SHMT1-205ENST00000395684 DCHS1Q96JQ0 3298 aa10.31□□□□□ -0.76
SHMT1-205ENST00000395684 TANC2Q9HCD6 1990 aa10.31□□□□□ -0.76
SHMT1-205ENST00000395684 M0R296 226 aa10.31□□□□□ -0.76
SHMT1-205ENST00000395684 CTRLP40313 264 aa10.31□□□□□ -0.76
SHMT1-205ENST00000395684 TMEM68Q96MH6 324 aa10.31□□□□□ -0.76
SHMT1-205ENST00000395684 NDUFA4L2Q9NRX3 87 aa10.31□□□□□ -0.76
SHMT1-205ENST00000395684 PLCE1Q9P212 2302 aa10.31□□□□□ -0.76
SHMT1-205ENST00000395684 HLA-DQA1P01909 254 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 ATP5IP56385 69 aaPredicted RBP10.3□□□□□ -0.76
SHMT1-205ENST00000395684 SLAQ13239 276 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 BATFQ16520 125 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 COX19Q49B96 90 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 NIT1Q86X76 327 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 FAM19A2Q8N3H0 131 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 DNAJC4Q9NNZ3 241 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 DLEU1O43261 78 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 ZNF324O75467 553 aaPredicted RBP10.3□□□□□ -0.76
SHMT1-205ENST00000395684 PYYP10082 97 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 CHRNB4P30926 498 aa10.3□□□□□ -0.76
SHMT1-205ENST00000395684 UBE2L3P68036 154 aaKnown RBP10.3□□□□□ -0.76
SHMT1-205ENST00000395684 MRPL20Q9BYC9 149 aaKnown RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms