RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 THYN1Q9P016 225 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 WI2-2373I1.2A0A1W2PRP0 233 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 BMPR1BO00238 502 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 VAMP1P23763 118 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 NKX2-1P43699 371 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-202ENST00000394943 AKR1C2P52895 323 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 ETFRF1Q6IPR1 90 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 OR1S2Q8NGQ3 325 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 EEF1AKMT3Q96AZ1 226 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 AQP10Q96PS8 301 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 TRGV9Q99603 122 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 ZC4H2Q9NQZ6 224 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 BOLA1Q9Y3E2 137 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 MAP1AP78559 2803 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-202ENST00000394943 TRAV30A0A087WSZ9 112 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 TRAV2A0A0B4J234 112 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 OR2C1O95371 312 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 RAP2BP61225 183 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 GNB1P62873 340 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 PLGLAQ15195 96 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 IZUMO4Q1ZYL8 232 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 C12orf54Q6X4T0 127 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 ZFAND3Q9H8U3 227 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 NOTCH2Q04721 2471 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 RPS10-NUDT3A0A1W2PQS6 291 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 SRSF2Q01130 221 aaKnown RBP5.37□□□□□ -1.55
LIMA1-202ENST00000394943 ATP6V1FQ16864 119 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 IAH1Q2TAA2 248 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-202ENST00000394943 PXDC1Q5TGL8 231 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 SSX9Q7RTT3 188 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 OR4F17Q8NGA8 305 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 OR4F4Q96R69 305 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 ARV1Q9H2C2 271 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 HIPK2Q9H2X6 1198 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 NDUFA4O00483 81 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 CLN5O75503 358 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 NXPH3O95157 252 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 CTSGP08311 255 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 NPY1RP25929 384 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 RHOGP84095 191 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 ATP5G2Q06055 141 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 SAMD5Q5TGI4 173 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 C1QL4Q86Z23 238 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 NEURL2Q9BR09 285 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 TECRQ9NZ01 308 aaKnown RBP5.37□□□□□ -1.55
LIMA1-202ENST00000394943 PEF1Q9UBV8 284 aaKnown RBP5.37□□□□□ -1.55
LIMA1-202ENST00000394943 NSG2Q9Y328 171 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 HMSDA8MTL9 139 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 E5RGE8 158 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 LINC01619G3V211 115 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 CNIH1O95406 144 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 IGLC1P0CG04 106 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 OR13C7P0DN81 318 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 CXCL3P19876 107 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 ZNF345Q14585 488 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 ACSM6Q6P461 480 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 SCARB1Q8WTV0 552 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 CLCC1Q96S66 551 aa5.37□□□□□ -1.55
LIMA1-202ENST00000394943 FAM103A1Q9BTL3 118 aaKnown RBP5.37□□□□□ -1.55
LIMA1-202ENST00000394943 RANGRFQ9HD47 186 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-202ENST00000394943 RNF222A6NCQ9 220 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 TGOLN2O43493 480 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 MPC2O95563 127 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 TOMM40O96008 361 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 CFDP00746 253 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-202ENST00000394943 ADMP35318 185 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 INSL3P51460 131 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 FGL1Q08830 312 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 OR1S1Q8NH92 325 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 GRPEL2Q8TAA5 225 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 RCC1LQ96I51 464 aaKnown RBP5.36□□□□□ -1.55
LIMA1-202ENST00000394943 FAM110AQ9BQ89 295 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 SEPSECSQ9HD40 501 aaKnown RBP5.36□□□□□ -1.55
LIMA1-202ENST00000394943 FBXL7Q9UJT9 491 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 TCRBV4S1A1TA0A5B7 111 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 M0QZ24 198 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 HOXB5P09067 269 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 FCN2Q15485 313 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 ARSJQ5FYB0 599 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-202ENST00000394943 FAM90A2PQ658T7 463 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 CASTOR1Q8WTX7 329 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 PDCD10Q9BUL8 212 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 GPR61Q9BZJ8 451 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 VSIRQ9H7M9 311 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 C13orf42A0A1B0GVH6 325 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 ACTL6BO94805 426 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 TRGV3P03979 118 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 PET100P0DJ07 73 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 C15orf32Q32M92 178 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 ADAMTSL5Q6ZMM2 481 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 TMEM144Q7Z5S9 345 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 TMEM190Q8WZ59 177 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 ST6GAL2Q96JF0 529 aa5.36□□□□□ -1.55
LIMA1-202ENST00000394943 ANKRD34BA5PLL1 514 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 A8MZ25 164 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 GOSR2O14653 212 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 GGCTO75223 188 aaKnown RBP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 IGKV1-17P01599 117 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 ZP3P21754 424 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 SULT1A1P50225 295 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms