RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 C5orf30Q96GV9 206 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 PARP14Q460N5 1801 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 TRAV12-3A0A0B4J271 114 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 SNAI2O43623 268 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 DPM2O94777 84 aa10.75□□□□□ -0.69
CCDC88C-204ENST00000389857 CHD5Q8TDI0 1954 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 TPRP12270 2363 aaKnown RBP10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 CEACAM1P13688 526 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 ORMDL2Q53FV1 153 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 CYSLTR1Q9Y271 337 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 SSC4DQ8WTU2 575 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 MYOFQ9NZM1 2061 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 ADARB2-AS1A8MUL3 147 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 IGHV1-2P23083 117 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 PLNP26678 52 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 MESP2Q0VG99 397 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 DTX1Q86Y01 620 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 COQ2Q96H96 371 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 IMMP2LQ96T52 175 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 RFPL3SP0C7P2 107 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 TIAF1O95411 115 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 ATP5G3P48201 142 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 CARHSP1Q9Y2V2 147 aaKnown RBP10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 TRAV8-4A0A0B4J246 113 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 OR9G4Q8NGQ1 327 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 ARID2Q68CP9 1835 aa10.74□□□□□ -0.69
CCDC88C-204ENST00000389857 A0A0G2JK05 382 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 YPEL1O60688 119 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 IGHV3-11P01762 117 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 SRP19P09132 144 aaKnown RBP10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 TDGF1P3P51864 188 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 UBE2DNLQ8IWF7 75 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 YPEL2Q96QA6 119 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 CHTOPQ9Y3Y2 248 aaKnown RBP10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 CD28P10747 220 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 ST6GALNAC6Q969X2 333 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 SPTBP11277 2137 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 UPK2O00526 184 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 HOXA3O43365 443 aaPredicted RBP10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 FAM89BQ8N5H3 189 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 GLMPQ8WWB7 406 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 ERVH48-1M5A8F1 160 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 LINC01549A6NIU2 74 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 C15orf61A6NNL5 157 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 PCP4P48539 62 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 S100A7L2Q5SY68 101 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 DERL1Q9BUN8 251 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 SAA2-SAA4A0A096LPE2 208 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 GGTLC3B5MD39 225 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 LINC00614P0C842 121 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 SAA2P0DJI9 122 aaPredicted RBP10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 TMEM144Q7Z5S9 345 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 SEPSECSQ9HD40 501 aaKnown RBP10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 METRNQ9UJH8 293 aa10.73□□□□□ -0.69
CCDC88C-204ENST00000389857 PPBPP02775 128 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 CTSBP07858 339 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 TMEM190Q8WZ59 177 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 PRADC1Q9BSG0 188 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 F2Z2F3 143 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 HBDP02042 147 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 CLDN16Q9Y5I7 305 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 MDC1Q14676 2089 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 CELA3AP09093 270 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 RTBDNQ9BSG5 229 aaPredicted RBP10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 CASP8AP2Q9UKL3 1982 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 RALGAPA1Q6GYQ0 2036 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 ZNF600Q6ZNG1 722 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 C1QL2Q7Z5L3 287 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 RNF125Q96EQ8 232 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 ABHD17AQ96GS6 310 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 REPIN1Q9BWE0 567 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 ZP1P60852 638 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 SRSF6Q13247 344 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 FAM201AQ5SY85 155 aa10.72□□□□□ -0.69
CCDC88C-204ENST00000389857 PTPRFP10586 1907 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 CKS1BP61024 79 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 ZNF585BQ52M93 769 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 DMRTA1Q5VZB9 504 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 C18orf12Q96KH6 178 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 TMEM133Q9H2Q1 129 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 A0A1W2PR77 199 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 OVOL1O14753 267 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 PSG7Q13046 419 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 RP1P56715 2156 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 MORN3Q6PF18 240 aaPredicted RBP10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 FAM19A2Q8N3H0 131 aa10.71□□□□□ -0.69
CCDC88C-204ENST00000389857 TRAV2A0A0B4J234 112 aa10.71□□□□□ -0.7
CCDC88C-204ENST00000389857 CCL20P78556 96 aa10.71□□□□□ -0.7
CCDC88C-204ENST00000389857 RALGAPA2Q2PPJ7 1873 aa10.71□□□□□ -0.7
CCDC88C-204ENST00000389857 SPRED2Q7Z698 418 aa10.71□□□□□ -0.7
CCDC88C-204ENST00000389857 EPDR1Q9UM22 224 aa10.71□□□□□ -0.7
CCDC88C-204ENST00000389857 SIGLEC15Q6ZMC9 328 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 ZNF525Q8N782 197 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 C8orf46Q8TAG6 207 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 IGHV3OR16-8A0A075B7F1 116 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 FAM90A9PA6NNJ1 464 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 IGKCP01834 107 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 THBDP07204 575 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 DSCR9P59020 149 aa10.7□□□□□ -0.7
CCDC88C-204ENST00000389857 RHOGP84095 191 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms